RetrogeneDB ID: | retro_ggor_3021 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:61932580..61933272(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GRPEL2 | ||
Ensembl ID: | ENSGGOG00000005410 | ||
Aliases: | None | ||
Description: | GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:G3QRN6] |
Percent Identity: | 82.76 % |
Parental protein coverage: | 99.57 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SAEIGNMAVRSLWAGRLRVQRLLAWSAAWESKGWPLPFSTATQRTAGEDCRSEDPPDELGPPLAERALRV |
SA..GNMA..S.WAG..RV..LLA.SA.WESKG.PLPFSTA.Q.TAGEDC.SED.PD.LGP.LAE.ALRV | |
Retrocopy | SAQVGNMAMWSMWAGCQRV*HLLA*SASWESKGCPLPFSTAIQGTAGEDCHSEDLPDGLGPSLAEQALRV |
Parental | KAVKLEKEVQDLTVRYQRAVADCENIRRQTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEESEPE |
KAVKLEKEVQDL.VRY.RA.ADCENIRR.T.RCVEDAKIFGIQSFCKDLVEVADILEKTTECISEESEP. | |
Retrocopy | KAVKLEKEVQDLMVRYRRAIADCENIRR*TRRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEESEPG |
Parental | DQKLTLEKVFRGLLLLEAKLKSVFAKHGLEKLTPIGDKYDPHEHE-LICHVPAGVGVQPGTVALVRQDGY |
DQKLTLEKVF..L.LLEAKLKSVFAKHGLEKLTPIGDKYD.HEHE...CHVPAGV.VQ.GT.AL.RQDG. | |
Retrocopy | DQKLTLEKVFQWLSLLEAKLKSVFAKHGLEKLTPIGDKYDSHEHE<ILCHVPAGVVVQSGTMALMRQDG* |
Parental | KLHGRTIRLARVEVAVESQRRL |
KLHG.TIRLA.VEV.VESQRRL | |
Retrocopy | KLHGCTIRLAQVEVEVESQRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 10 .32 RPM |
SRP007412_heart | 0 .00 RPM | 2 .69 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .22 RPM |
SRP007412_liver | 0 .00 RPM | 5 .51 RPM |
SRP007412_testis | 0 .10 RPM | 11 .29 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4842 |
Pan troglodytes | retro_ptro_3226 |
Pongo abelii | retro_pabe_3764 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004070 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011142 | 1 retrocopy | |
Felis catus | ENSFCAG00000003624 | 1 retrocopy | |
Homo sapiens | ENSG00000164284 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005410 | 2 retrocopies |
retro_ggor_1008, retro_ggor_3021 ,
|
Macaca mulatta | ENSMMUG00000021662 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010160 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016138 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014326 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017396 | 2 retrocopies | |
Sorex araneus | ENSSARG00000005467 | 2 retrocopies |