RetrogeneDB ID: | retro_ggor_451 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:154206396..154206864(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF4 | ||
Ensembl ID: | ENSGGOG00000012070 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.49 % |
Parental protein coverage: | 89.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEKLLSFLKDVYV |
MGA.V.R.IRNFNLEN.AE.EI.KMKP...PRHPSTNSLL.EQIS.Y.E.KGEIA.KD.KLLSFLKDVYV | |
Retrocopy | MGAAVTRRIRNFNLEN*AEWEINKMKPPPNPRHPSTNSLLQEQISFYSEIKGEIAHKDDKLLSFLKDVYV |
Parental | DSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEALTLLNNHKLFPETWTAEKIMQ |
DS.DPVSS.QVKAAETCQE.KEFRLP..HHF.MINIK.IPKGKISIVEA.TLLNNHKL.PET.TAEKI.Q | |
Retrocopy | DSNDPVSSVQVKAAETCQELKEFRLPFGHHFNMINIKIIPKGKISIVEASTLLNNHKLYPET*TAEKIAQ |
Parental | EYQLEQKDVNSLLKYF |
EY.LEQKD.NS....F | |
Retrocopy | EYHLEQKDANSEVEIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .02 RPM |
SRP007412_cerebellum | 0 .04 RPM | 5 .59 RPM |
SRP007412_heart | 0 .00 RPM | 4 .97 RPM |
SRP007412_kidney | 0 .08 RPM | 9 .73 RPM |
SRP007412_liver | 0 .00 RPM | 7 .25 RPM |
SRP007412_testis | 0 .00 RPM | 7 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_578 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |