>retro_ggor_454
TGTGCTCTGTGACTGTGCATTTTCAACAGCTCTAACAAACTCTTTCAATATGCTAGCACTGATATGGACAAAGTTCTTCT
TAAGTATACAGAATATAATTAACCTTATGAAAGCACAACCAACTCAGATATTGTTGAGGCTCTGAACAAGAAGGAACACA
GAGGGTGCAACAGCTCAGACCCTGATACTTCATGTGTGCTAACTCCACCTACAGAAGAAAAATATAAAAAATTAATGAGG
AATTTGATAATATGATGCAGAATCATAACATTGCACCTGGTTTGCCACCTCAGAATTTTTCAATGTCTGTCACAGTTCCA
GTGAAAAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCCCATCCTTGGCAGCCAGCTCAACGTT
AACAGATTTAAACACGCTCTCTCCACCTCAAACCATATTACATAGAAATGTGTCCCCTGGAGCTCCTCAGAGACCACCAA
GTACTGGCAATGCAGGTGGGATGTTGGGCACTACAGACCTCACAGTGCCAAATGGAACTGGAAGCAGCCCAGTGGGGAAT
GAATTTGTAAACTCAAGAGCTTCTCCAAATTTGATTGGAGCTACTGGTGCAAATAGTTTAGGTAAAGCCATGCCTACAAA
GTCTCCCCCTCCACCAGGTGGCAGTAATCTTGGAATGAACAGTGGAAAACCAGATCTTCAAGTTGTCATCCCTGCTTCAA
GCAAGGGCATGACACCTCCACTAGTAAGTTGAACCTTTCTTCAACTTCATTCT
ORF - retro_ggor_454 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.71 % |
Parental protein coverage: |
52.23 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | CEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPH |
| C...L.IFNSSNKLFQYASTDMDKVLLKYTEYN.P.ES.TNSDIVEALNKKEHRGC.S.DPDTS.VLTP. |
Retrocopy | CAL*LCIFNSSNKLFQYASTDMDKVLLKYTEYN*PYESTTNSDIVEALNKKEHRGCNSSDPDTSCVLTPP |
|
Parental | TEEKYKK-INEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSM |
| TEEKYKK.INEEFDNMM.NH.IAPGLPPQNFSMSVTVPV.SPNALSYTNPGSSLVSPSLAASSTLTD... |
Retrocopy | TEEKYKK<INEEFDNMMQNHNIAPGLPPQNFSMSVTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNT |
|
Parental | LSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLAVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGK |
| LSPPQT.LHRNVSPGAPQRPPSTGNAGGML.TTDL.VPNG.GSSPVGN.FVNSRASPNLIGATGANSLGK |
Retrocopy | LSPPQTILHRNVSPGAPQRPPSTGNAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGK |
|
Parental | VMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNT |
| .MPTKSPPPPGG.NLGMNS.KPDL.VVIP.SSKGM.PPL.....L.L.. |
Retrocopy | AMPTKSPPPPGGSNLGMNSGKPDLQVVIPASSKGMTPPLVS*TFLQLHS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .05 RPM |
58 .79 RPM |
SRP007412_cerebellum |
0 .16 RPM |
51 .73 RPM |
SRP007412_heart |
0 .16 RPM |
33 .52 RPM |
SRP007412_kidney |
0 .08 RPM |
34 .67 RPM |
SRP007412_liver |
0 .05 RPM |
26 .72 RPM |
SRP007412_testis |
0 .41 RPM |
36 .47 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_454 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_454 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.