RetrogeneDB ID: | retro_ggor_480 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:207620289..207620968(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUCKS1 | ||
Ensembl ID: | ENSGGOG00000026655 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.23 % |
Parental protein coverage: | 95.88 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | VSSFYRNRKV-VDYSQFQESDDADEDYGRDSGPPT-KKIRSSPREAKNKRRSGKNSQEDSEDSEDKDVKT |
.S...R.RKV.VDYSQFQES.DA.EDYGRDSGP.T..K....P...K..R.SG.NSQEDSEDSE.KD.KT | |
Retrocopy | MSRLFRTRKV>VDYSQFQESGDANEDYGRDSGPIT>RKFHHLP*KLKI-RQSGNNSQEDSEDSEEKDLKT |
Parental | KKDDSHSAEDSEDEKEDHKN-VRQQRQAASKAASKQREMLMEDV-GSEEEQEEEDEAPFQEKDSGSDEDF |
KKDD.H.A...ED...............A....S.....LMEDV.G.EEEQEE.DEAPFQE..S.S.EDF | |
Retrocopy | KKDDFH*A---EDNEDENED>IKMYASTAGSI*SSFQTELMEDV<GHEEEQEE-DEAPFQE-NSSSNEDF |
Parental | LMEDDDDSDYGSSKKKNKKMVKKSKPERKEKKMPKPRLKATVTPSPVKGKGKVGRPTASKASKEKTPSPK |
LMEDDD.SDYG........MVKKSKPERKEKKM.KPRLKATVTPSPVKGKG.VGRPTASK.SKEK..SPK | |
Retrocopy | LMEDDDNSDYGNXXXXXXXMVKKSKPERKEKKMSKPRLKATVTPSPVKGKGNVGRPTASKPSKEKITSPK |
Parental | EEDEEPESPPEKKTSTS-PPPEKSGDEG |
.EDE.PESPPEKKTSTS.PPP.KSGDEG | |
Retrocopy | -EDEVPESPPEKKTSTS<PPPKKSGDEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 216 .08 RPM |
SRP007412_cerebellum | 0 .00 RPM | 210 .47 RPM |
SRP007412_heart | 0 .00 RPM | 77 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 203 .22 RPM |
SRP007412_liver | 0 .00 RPM | 160 .01 RPM |
SRP007412_testis | 0 .00 RPM | 149 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_521 |
Pan troglodytes | retro_ptro_389 |
Macaca mulatta | retro_mmul_422 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012950 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008001 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001855 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017212 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000003183 | 1 retrocopy | |
Homo sapiens | ENSG00000069275 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026655 | 1 retrocopy |
retro_ggor_480 ,
|
Macropus eugenii | ENSMEUG00000007829 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005645 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001832 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014564 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001904 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047287 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015641 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000910 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003751 | 1 retrocopy |