RetrogeneDB ID: | retro_ggor_625 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:3913382..3913604(+) | ||
Located in intron of: | ENSGGOG00000014152 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACBD7 | ||
Ensembl ID: | ENSGGOG00000015777 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.92 % |
Parental protein coverage: | 84.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDAM |
LQADFD..AEDVRKLK.RPD...LK.LYGL.KQAI.GDIN..C.GMLDLKGKAK.EA.N...G.S....M | |
Retrocopy | LQADFDSVAEDVRKLKTRPDEEGLKQLYGL*KQAITGDINTECSGMLDLKGKAK*EALNFQNGISKDNVM |
Parental | SAYI |
S.YI | |
Retrocopy | SVYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 7 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .16 RPM |
SRP007412_heart | 0 .03 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .41 RPM |
SRP007412_liver | 0 .00 RPM | 0 .29 RPM |
SRP007412_testis | 0 .00 RPM | 1 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_530 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009249 | 1 retrocopy | |
Felis catus | ENSFCAG00000027337 | 1 retrocopy | |
Homo sapiens | ENSG00000176244 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000010372 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015777 | 3 retrocopies |
retro_ggor_1152, retro_ggor_1257, retro_ggor_625 ,
|
Macaca mulatta | ENSMMUG00000010587 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012353 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000002111 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000041316 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007153 | 1 retrocopy |