RetrogeneDB ID: | retro_ggor_679 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:121113158..121114181(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000025359 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAE1 | ||
Ensembl ID: | ENSGGOG00000013078 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVEKEEAGGGISEEEA-AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE |
MVEKEEAGGGIS.EEA.AQYD.QI.L.GLEA.K.LRAS.VLLV..KGLGAEIAKNLILAGVKGLTMLDHE | |
Retrocopy | MVEKEEAGGGISQEEA>AQYDQQICLRGLEAPKWLRASQVLLVSMKGLGAEIAKNLILAGVKGLTMLDHE |
Parental | QVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVC-LTCCSRDV |
Q..PE.PGAQFLI..GSVGRNRAEASLERAQNLNPMVDVK.DTEDIEKKPESFFTQFDAVC.LTCCSR.V | |
Retrocopy | QISPEEPGAQFLIHIGSVGRNRAEASLERAQNLNPMVDVKLDTEDIEKKPESFFTQFDAVC<LTCCSRAV |
Parental | IVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVK |
IVKVDQICHKNSIKFF.GDVF.YHGYTFANLGEHEFVEEKTKVAKVS.GVED.PDTKR.K.DSSETTMVK | |
Retrocopy | IVKVDQICHKNSIKFFAGDVFSYHGYTFANLGEHEFVEEKTKVAKVSRGVEDEPDTKRVKPDSSETTMVK |
Parental | KKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLD |
KKVVFCPVKE.L.VDWSSEKAKAALKRTTSD.FLLQVLLKFRTDKGRDPSSDT..EDSELLLQIRNDVLD | |
Retrocopy | KKVVFCPVKEGLDVDWSSEKAKAALKRTTSDHFLLQVLLKFRTDKGRDPSSDTHGEDSELLLQIRNDVLD |
Parental | SLGISPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVECLGPK |
SLGI.PD.....F....FSEMAPVCAVVGGILAQEIVKALSQ.DPPHN..FFF.GMKGNGIVE.LGPK | |
Retrocopy | SLGIIPD---PRFITDFFSEMAPVCAVVGGILAQEIVKALSQQDPPHN--FFFNGMKGNGIVEWLGPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 145 .97 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .22 RPM |
SRP007412_heart | 0 .00 RPM | 28 .14 RPM |
SRP007412_kidney | 0 .04 RPM | 44 .45 RPM |
SRP007412_liver | 0 .00 RPM | 30 .91 RPM |
SRP007412_testis | 0 .41 RPM | 187 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_829 |
Pan troglodytes | retro_ptro_579 |
Pongo abelii | retro_pabe_742 |
Macaca mulatta | retro_mmul_1087 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004180 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000012199 | 1 retrocopy | |
Homo sapiens | ENSG00000142230 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013078 | 1 retrocopy |
retro_ggor_679 ,
|
Macaca mulatta | ENSMMUG00000009506 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002965 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002966 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010168 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011202 | 1 retrocopy |