RetrogeneDB ID: retro_ggor_688

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:434383..434611(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000023636
• Aliases: None
• Description: None

Sequence

>retro_ggor_688
CCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACTTGAGGTCAGGAGTTTGTGACCAGCCTGACTAACATG
GTGAAATCCCAACTCTACTAAAAATATGAAATTAGCCGGGCGTGGTGGCACGCACCTGTAATCCCAGCTACTTGAGGGCC
TGAAGCAGGAGAATCGCTTGAATCCAGGAGGGGGAAGTTGCAGTGAGCCAAGATTGTGCCATTGCACT

Alignment

ORF - retro_ggor_688 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.58 %
• Parental protein coverage: 83.52 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PVILALWEAEVGRSPEVRSSRPAWPTWQNSISTKNTKISQVSLNCGWDKLLRRLRYENRLNLGDGGCSEP
          PVI.ALWEA..G.S.EVRS..PA..TW.N..STKN.K............LL..L..ENRLN.G.G.CSEP
Retrocopy PVIPALWEAKAGGSLEVRSL*PA*LTW*NPNSTKNMKLAGRGGTHL*SQLLEGLKQENRLNPGGGSCSEP

Parental  RSCHCT
          R.CHCT
Retrocopy RLCHCT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.04 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.04 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_688 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_688 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000034129	3 retrocopies	retro_cjac_3646, retro_cjac_3740, retro_cjac_3780,
Gorilla gorilla	ENSGGOG00000023636	1 retrocopy	retro_ggor_688 ,
Gorilla gorilla	ENSGGOG00000027169	1 retrocopy	retro_ggor_2832,