>retro_ggor_690
ACTGAATTGTGCCTAGGTGTTGATGCTTTGGGTCTGAATATTTATGAGCATGATGACAAGTTAACACCTAAAACTGGTTT
TCCGTGGAGTGAAATCAGAAATGTTTCATTTAATGACAAAAAATTTGTTATAAAGCCAATCAACAAAAAGACACCTGATT
TTGGTTTTTATGCCCCTCACCTGAGAGTCAATAAGCAGATTTTGGCCTTATGTATGGGAAACCACGAACTATACATGCGA
AGAAGGAAGCCTGATACTATTGAAGTATGACAGATGAGGGCTCAGGCTAGGAAGGAGAAACATCAGAAGCAGTTGGAGAG
GGCACAATTAGAGAATAAAAAGAAGAAAAGAGAAATAGCAGAAAAGGAAAGAATAGAATGTGAAAAGGAAGAGCTAATGG
AACGTCTAAAACAAATAGAAGAACAGACGATTAAAGCCCAGAAATAACTAGAAGAACGGACGCAAAAAGCTCTAGAACTG
GATCAAGAATGAAAACGAGCAAAAGAAGCAGCAGAGTGGCTTGAAAAGGAGCGTCGAGCTGCTGAAGAGGCGAAGTCTGC
CATAGCAAAACAAGCTGCCGACCAGAAGAAGAATCAGGAGCAGCTAGCAGCAAAACTTGCTCAATTCACTGCCAAGATTG
TACTTCTAGAAGAAGCCAAGAAGAAAAAGGAAGAGGAAGCTACTGAGTGGCAACACAAAGGTTTTGCAGCCCAGAAGACT
TGGAAAAGACCAAAGAAGAGTTAAAAACTGTGATGTCTGCCCCACCCCCGACCTCCACCACCACCACCACCAGTCATTCC
TTCGACAGAAAATGAACGTGATGAACATGATGAGATTAGTGCTGAGGCTCGTGCTGAATTATCAAATGAAGGGGTAATGA
ACCATAGAAGCAAAGAAGAACATGTAACATAAACACAGAAAAACGAGCGTGTTAAGAAGCAACTTCAGGCCTTAAGTTCA
GAATTAGCCCAAGCCAGAGATGAAACCAAGAAAACACAAAAGGATGTTCTTCAGGCTAAGAATGTTGAAACAGGCCATGG
TAAGTACAAGACTCTGTGACCGATTCGACAAGGCAACACAAAGCAGCGTACCAGTGAGTTTGAAGCAATG
ORF - retro_ggor_690 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
57.82 % |
Parental protein coverage: |
63.71 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | TDLWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILQL |
| T.L.LGVDALGLNIYE.DDKLTPK.GFPWSEIRN.SFNDKKFVIKPI.KK.PDF.FYAP.LR.NK.IL.L |
Retrocopy | TELCLGVDALGLNIYEHDDKLTPKTGFPWSEIRNVSFNDKKFVIKPINKKTPDFGFYAPHLRVNKQILAL |
|
Parental | CMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERRQQLETEKKRRETVEREKEQMMREKEELMLRLQ |
| CMGNHELYMRRRKPDTIEV.QM.AQAR.EKHQKQLER.Q.....................E..E...... |
Retrocopy | CMGNHELYMRRRKPDTIEV*QMRAQARKEKHQKQLERAQXXXXXXXXXXXXXXXXXXXXEELMERLKQIE |
|
Parental | DYEEKTKKAERELSEQIQRALQLEEERKRAQEEAERLEADRMAALRAKEELERQAVDQIKSQEQLAAELA |
| ....K..K...E.......AL.L..E.KRA.E.AE.LE..R.AA..AK.....QA.DQ.K.QEQLAA.LA |
Retrocopy | EQTIKAQK*LEERTQK---ALELDQE*KRAKEAAEWLEKERRAAEEAKSAIAKQAADQKKNQEQLAAKLA |
|
Parental | EYTAKIALLEEARRRKEDEVEEWQHRAKEAQ-DDLVKTKEELHLVMTAPPP-PPPPVYEPVSYHVQESLQ |
| ..TAKI.LLEEA...KE.E..EWQH....AQ..DL.KTKEEL..VM.APPP.PPPP...P......E... |
Retrocopy | QFTAKIVLLEEAKKKKEEEATEWQHKGFAAQ<EDLEKTKEELKTVMSAPPP>PPPP--PPPVIPSTENER |
|
Parental | DEGTEPTGYS-AELSSEGIRDDRNEEKRITEAEKNERVQRQLLTLSSELSQARDENKRTHNDIIHNENMR |
| DE..E......AELS.EG....R..E...T...KNERV..QL..LSSEL.QARDE.K.T..D.....N.. |
Retrocopy | DEHDEISAEARAELSNEGVMNHRSKEEHVT*TQKNERVKKQLQALSSELAQARDETKKTQKDVLQAKNVE |
|
Parental | QGRDKYKTLRQIRQGNTKQRIDEFEAL |
| .G..KYKTL..IRQGNTKQR..EFEA. |
Retrocopy | TGHGKYKTL*PIRQGNTKQRTSEFEAM |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
71 .12 RPM |
SRP007412_cerebellum |
0 .04 RPM |
10 .09 RPM |
SRP007412_heart |
0 .00 RPM |
58 .38 RPM |
SRP007412_kidney |
0 .00 RPM |
384 .72 RPM |
SRP007412_liver |
0 .00 RPM |
28 .99 RPM |
SRP007412_testis |
0 .00 RPM |
168 .04 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_690 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_690 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
7 retrocopies.