>retro_ggor_913
AACATGAATCTTGATGGCTCTGCACAAGATACTGAAAAGAGGGAATATTCTTCTGTCTGGGTGGGCAGAGAAGATGACAT
TAAAAAATCTGAAAGAATAACAGCTGTTGTCCATGATAGAGAAGTGGTCATTTTCTATCACAAGGGAGAATATCATGCTA
TGGATATTGGCTGTTACCACTCAGGAGGACCTTTACATTTGGGAGATATAGAGGATTTTGATGGATGACCGTGTATAGTT
TGCCGCTGGCATAAATACAAAATTACTTTGGCAACAGGAGAAGGTGTATACCAGACTATAAACTCTAAAGATCCATCAGC
AAAACCCAAGTAGTGCTCCAAAGGAATAAAGCAAAGGATTCACACAGTGACAGTAGACAATGGGAATATTTATGTGACTC
TTTCTAATGAA
ORF - retro_ggor_913 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.97 % |
Parental protein coverage: |
65.24 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SMNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDI |
| .MNLDGSAQD.EKREYSSV.VGREDDIKKSER.TAVVHDREVVIFYHKGEYHAMDI.CYHSGGPLHLGDI |
Retrocopy | NMNLDGSAQDTEKREYSSVWVGREDDIKKSERITAVVHDREVVIFYHKGEYHAMDIGCYHSGGPLHLGDI |
|
Parental | EDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNGNIYVTLSNE |
| EDFDG.PCIVC.WHKYKITLATGEG.YQ.IN.KDPSAKPK.CSKGIKQRIHTVTVDNGNIYVTLSNE |
Retrocopy | EDFDG*PCIVCRWHKYKITLATGEGVYQTINSKDPSAKPK*CSKGIKQRIHTVTVDNGNIYVTLSNE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
0 .82 RPM |
SRP007412_cerebellum |
0 .00 RPM |
1 .50 RPM |
SRP007412_heart |
0 .00 RPM |
0 .31 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .41 RPM |
SRP007412_liver |
0 .00 RPM |
0 .55 RPM |
SRP007412_testis |
0 .00 RPM |
11 .60 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_913 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_913 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.