RetrogeneDB ID: | retro_ggor_943 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:51518601..51519613(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC20 | ||
Ensembl ID: | ENSGGOG00000000435 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.92 % |
Parental protein coverage: | 92.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAPWTLWRCCQRVVGWVPVLFITFVVVWSYYAYVVELCVFTIFGNEENGKTVVYLVAFHLFFV-MFVWSY |
MAPWTL.RCC..V.GWVPVLFITFVV.WSYYAYVVELCV.TIFGNEENGKTV..LVAFHL....MFVWSY | |
Retrocopy | MAPWTLSRCCHCVMGWVPVLFITFVVIWSYYAYVVELCVLTIFGNEENGKTVFNLVAFHLXXX>MFVWSY |
Parental | WMTIFTSPASPSKEFYLSNSEKERYEKEFSQERQQDILRRAARALPIYTTSASKIIRFCYLCFSIKNGVR |
WMTIFTSPASPSKEFYLS.SEKERY.K.FSQERQQ.ILRRAARALPI.T.S.SK.IR.C..C..IK.... | |
Retrocopy | WMTIFTSPASPSKEFYLSSSEKERYGK*FSQERQQEILRRAARALPICTMSVSKTIRYCEKCQLIKPDLA |
Parental | HHCAENNKCGMKKNNHTNWKVNNCVGFSNYKFFLLFLLYSLLYCLFVAA-TVLEYFIKFWTNELTDTRAK |
HHC.....C..K...H..W.VNNCVGFSNYKFFLLFLLYSLLYCLFVAA.TVLEYFIKFWTNELTDTRAK | |
Retrocopy | HHCSTCDSCILKMDHHCPW-VNNCVGFSNYKFFLLFLLYSLLYCLFVAA>TVLEYFIKFWTNELTDTRAK |
Parental | FHVLFLFFVSAMFFISVLSLFSYHCWLVGKNRTTIESFRAPTFSYGPDGNGFSLGCSKNWRQVFGDEKKY |
FHVLFLFFVSAMFFISVL.LFSYHCWLVGKNRTTIESF.APTFSYGPDGNGFSLG..K.WRQVFGDEKKY | |
Retrocopy | FHVLFLFFVSAMFFISVLLLFSYHCWLVGKNRTTIESFCAPTFSYGPDGNGFSLGYNKSWRQVFGDEKKY |
Parental | WLLPIFSSLGDGCS-FPTRLVGMDPEQASVTNQNEYARSSGSNQPFPIKPLSESKNRLLDSE |
WLL.IFSSLGDGCS.FPTRLVGM.PEQASVTNQNEYAR.SGSNQPFP.KPLSESK..LLDSE | |
Retrocopy | WLLSIFSSLGDGCS<FPTRLVGMGPEQASVTNQNEYAR-SGSNQPFPFKPLSESKTLLLDSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .11 RPM |
SRP007412_heart | 0 .00 RPM | 1 .19 RPM |
SRP007412_kidney | 0 .00 RPM | 2 .82 RPM |
SRP007412_liver | 0 .00 RPM | 2 .80 RPM |
SRP007412_testis | 0 .00 RPM | 31 .29 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1211 |
Pan troglodytes | retro_ptro_829 |
Macaca mulatta | retro_mmul_1288 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012155 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011489 | 1 retrocopy | |
Equus caballus | ENSECAG00000016465 | 1 retrocopy | |
Homo sapiens | ENSG00000180776 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000435 | 2 retrocopies |
retro_ggor_1003, retro_ggor_943 ,
|
Gorilla gorilla | ENSGGOG00000013490 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007373 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005201 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005695 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003013 | 1 retrocopy |