>retro_hvul_39
CCGCAGTGGCTGCGCCCGCTGCTGTCCGCGCGCTTCTTCGCGCAATGCAAGACGCACTCCGAGTCGCACCGGAGCGGCGA
GTGCAACATGTTCTGCCTCGACTGCGCCGCCGGGGCCGCCGCCGGCGCGGCGGCGCTGTGCTCGCTGTGCCTCGCGCACG
GGCACCGGGGGCACCACACCATCCAGATCCGCCGCTCCTCCTACCACGACGTCATCCGGGTGTCAGACATCCAGCGCTTC
ATGGACATCGCCGGCGTGCAGACCTACGTCATCAACAGCGCCCGCGTCGTCTTCCTCAACGAGCGGCCCCAGCAGAAGCA
GCCCGGCAAGGGCGGCGGCGGCGGCGGCGCCGGGAGCGCCAACCTCTGCGAGGTCTGCAGCCGCAGCCTCCTCGACAACT
TCCGCTTCTGCTCCCTCGGCTGCAAGGTGGCCGGCTGCTCCTCCGACGGGGGCGGC
ORF - retro_hvul_39 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.61 % |
Parental protein coverage: |
68.87 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | PGWLEALLGTRFFLACAAHPGSPRN-ECNMFCIDCR----ATPAAFCYYCRSHRHAAHRVIQIRRSSYHD |
| P.WL..LL..RFF..C..H..S.R..ECNMFC.DC.....A..AA.C..C..H.H..H..IQIRRSSYHD |
Retrocopy | PQWLRPLLSARFFAQCKTHSESHRSGECNMFCLDCAAGAAAGAAALCSLCLAHGHRGHHTIQIRRSSYHD |
|
Parental | VVRVTEVEDVLDIAGVQTYVINSARVLFLNERPQPRGAGAAAGKAAASPYN-CEICGRALLDPFRFCSLG |
| V.RV.......DIAGVQTYVINSARV.FLNERPQ....G...........N.CE.C.R.LLD.FRFCSLG |
Retrocopy | VIRVSDIQRFMDIAGVQTYVINSARVVFLNERPQQKQPGKXXXXXXXGSANLCEVCSRSLLDNFRFCSLG |
|
Parental | CKLVDTKTHGHG |
| CK.......G.G |
Retrocopy | CKVAGCSSDGGG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_39 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.