>retro_hvul_72
CCTGGTGGATTTAATGGTTTGAAGGTCGGTGAGCAGAATGCTGGAGAGCAAGCACATGAACGGAGTTACCAGGTGGACAA
GTGCCCGTATTCTGGCCTTGAAAATGTTGTAGTTGTTCGAGGTTCAGGACCGCATGCTCTGCATTACGATGGGCAACCTG
GTCAATCTATGAAGGAGATTATTGTAAGTCGAAATGTGCAGAGTTGGTTCTTCGAGGAGCAAAGGTGTATGTACCTGGTG
TTTTAGATTGCAGTGCACATTATGAAAGGGTGATAAGATTGCAGTGTCAGTTGCTATTGAGCAACCTGTTAAGGACAGTG
GTTGGGCTGATGGTAAAACAGGAGGAATCGTTCTACAGGGGTCGTAGTCAGATGCACATTATGAAGAGAGAAAGGGTTTG
TAAATTGGTCAAGGGTTTGCTGCAATG
ORF - retro_hvul_72 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.59 % |
Parental protein coverage: |
52.77 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | PGGFNGLKIGEQNGGEQAHEGSYQVDKCPYSGLENVLFVRGSGPHALHYDGQPGHSMKEIIVSR-KCAES |
| PGGFNGLK.GEQN.GEQAHE.SYQVDKCPYSGLENV..VRGSGPHALHYDGQPG.SMKEIIVSR.KCAE. |
Retrocopy | PGGFNGLKVGEQNAGEQAHERSYQVDKCPYSGLENVVVVRGSGPHALHYDGQPGQSMKEIIVSR<KCAEL |
|
Parental | VLRGAQVYVPGVLACSAHVE-KGDKIAVSVAIEQPVKDSGWAVGITRGIVLQGSQSDAHYEERKGLYIGQ |
| VLRGA.VYVPGVL.CSAH.E.KGDKIAVSVAIEQPVKDSGWA.G.T.GIVLQGS.SDAHYEERKGL.IGQ |
Retrocopy | VLRGAKVYVPGVLDCSAHYE<KGDKIAVSVAIEQPVKDSGWADGKTGGIVLQGS*SDAHYEERKGL*IGQ |
|
Parental | GIAAM |
| G.AAM |
Retrocopy | GFAAM |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_72 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
5 retrocopies.