>retro_itri_1154
ATGTCTGACCATGGAGATGTGAGCCTCCCAGCCAAAGACAGGGTAAGGGCTCTGTTCCAGTTGGGAAGTACCGTGGAAGT
GAAGGAAGACATTCCACCCCCTCCATACTTCGCTCTGGAGTTGAGATGATCCCAATGGCATCCATTTACTCTGAGCAAGG
CAACATTGAACATGCCTTCATCCTCTATAACAAGTAAATCATGCTTTTTATTGAGAAACTACCAAAGCATCGAGATTATA
AATCAGCTGTTATTCCTGAAAAGAAAGATACAGTGAAGAAATTAAAGTAGATTGCATTTCCCAAAGCAGAACAGCTGAAG
GCAGAGCTGTTAAAACCATATACCAAAGAATATACACAGTATAATGAAGAAAAGAAGAAAAAAGCAGAGGGATTTGCCCA
GAATATGGCTATCCAGTAAGATTTGGAAAAGGAAAGACAGAGGATAGCACAGCAAAAGCAGCAACGGATGGAAAAGGAAG
AGTTCCATGCCTTTGAAAAAATGATCCAGAACCAGGAGCTAGAAAAAGAGCAACTGAAAATTGTACAGGAATTTGGGAAG
GTGGATCCTGGCCTAGGTGGCCCACTGGTGCCTGACTTGGAAAAGCCCTCCTTAGATGGGTTCCCCACCTCGCCTGTGTC
ATCCACACAGTCTTCAGACTGTAACACAACTTAAAGGCCAGCTAAGCCACCAGTGGTGGACAGATCCTTGGAACCTGGAG
CTCCAAGCAACACTGAGAGTATTCCTACAATCGATGGATTGCCTCATGTGGTGGTGCCCGGGAGGCTGTGTCTGCAGTTT
CTCCAGTTAGCCAGTGCCAACATGGCTCTGAGAGTACAAACGTGGAATTCTCTTGGAAAACTGAGGAGGAATGAATTTAC
CATTAGCCCTGTTCTCATCCCCAAGCAAACTGCTGGGTCTGATTATTGCAACACAGAGAATGAAGAACAACTTTTCCTCA
TACAGGATCAGCAGGGTCTCATTACACTGGGCTGGATTCATACCCATCCCACACAGACTACCTTTCTCTCCAGTGTCCAC
CTACACACTCACTGTTCCTACCAGATGCTGCTGCCAGAGTCAATAGCTATTGTCTGCTCCCCCCAAGTTTCAGGAAACTG
GATTCTTTCAATTAACTGACCATGGACTAGAAGAGATTTCTTCATGTCACCAGAAAGGATTTCATCCCCACAGCAAGGAT
CCACTCTGTTTTGTAGCTGTATCCACGTGACTGTTGTGGACAGAGCAGTGATTGTCACAGACCTT
ORF - retro_itri_1154 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.85 % |
Parental protein coverage: |
99.76 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MSDHGDVSLPPEDRVRALSQLGSTVEVNEDIPPRRYF-RSGVEMIRMASIYSEEGNIEHAFILYNKYITL |
| MSDHGDVSLP..DRVRAL.QLGSTVEV.EDIPP..YF.RSGVEMI.MASIYSE.GNIEHAFILYNK.I.L |
Retrocopy | MSDHGDVSLPAKDRVRALFQLGSTVEVKEDIPPPPYF<RSGVEMIPMASIYSEQGNIEHAFILYNK*IML |
|
Parental | FIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYTKEYTQYNEEKKKKAEEFARNMAIQ |
| FIEKLPKHRDYKSAVIPEKKDTVKKLK.IAFPKAE.LKAELLK.YTKEYTQYNEEKKKKAE.FA.NMAIQ |
Retrocopy | FIEKLPKHRDYKSAVIPEKKDTVKKLK*IAFPKAEQLKAELLKPYTKEYTQYNEEKKKKAEGFAQNMAIQ |
|
Parental | QELEKERQRIAQQKQQQLEQEQFHAFEEMIRNQELEKERLKIVQEFGKVDPGLGGPLVPDLEKPSLDGFP |
| ..LEKERQRIAQQKQQ..E.E.FHAFE.MI.NQELEKE.LKIVQEFGKVDPGLGGPLVPDLEKPSLDGFP |
Retrocopy | *DLEKERQRIAQQKQQRMEKEEFHAFEKMIQNQELEKEQLKIVQEFGKVDPGLGGPLVPDLEKPSLDGFP |
|
Parental | TLPVSSTQPSDCNTTARPAKPPVVDRSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGV |
| T.PVSSTQ.SDCNTT.RPAKPPVVDRSL.PGA.SN.ESIPTIDGL.HVVVPGRLC.QFLQLASAN.A..V |
Retrocopy | TSPVSSTQSSDCNTT*RPAKPPVVDRSLEPGAPSNTESIPTIDGLPHVVVPGRLCLQFLQLASANMALRV |
|
Parental | ETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDL |
| .T...L.GKL.RNEFTI..VLIPKQ.AGSDYCNTENEE.LFLIQDQQGLITLGWIHTHPTQT.FLSSV.L |
Retrocopy | QTWNSL-GKLRRNEFTISPVLIPKQTAGSDYCNTENEEQLFLIQDQQGLITLGWIHTHPTQTTFLSSVHL |
|
Parental | HTHCSYQMMLPESIAIVCS-PKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDP-PLFCSCTHVTVVDRA |
| HTHCSYQM.LPESIAIVCS.PKFQETGFF.LTDHGLEEISSC.QKGFHPHSKDP..LFCSC.HVTVVDRA |
Retrocopy | HTHCSYQMLLPESIAIVCS>PKFQETGFFQLTDHGLEEISSCHQKGFHPHSKDP<TLFCSCIHVTVVDRA |
|
Parental | VTVTDL |
| V.VTDL |
Retrocopy | VIVTDL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_1154 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_1154 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.