RetrogeneDB ID: | retro_itri_278 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393281.1:33502703..33502906(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHCHD7 | ||
Ensembl ID: | ENSSTOG00000002724 | ||
Aliases: | None | ||
Description: | coiled-coil-helix-coiled-coil-helix domain containing 7 [Source:HGNC Symbol;Acc:28314] |
Percent Identity: | 56.52 % |
Parental protein coverage: | 78.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPVVTHRLRDPDI-NPCLLESDASRRCMDENNYDKERCSSYFLKYK-NCRRFWNSIMIQRRQNGVTPSM |
MP.V...LRD.DI..PCL.ES.....C.DE.NYD.ERCS..F...K.N..RFWNS.M.Q.RQNG..PS. | |
Retrocopy | MPEVKWKLRDSDI>SPCLPESNTPTKCTDEKNYDRERCSTVFSTFK>NYPRFWNSVMGQKRQNGAKPSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007055 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020301 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000024930 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002724 | 1 retrocopy |
retro_itri_278 ,
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