RetrogeneDB ID: | retro_lafr_295 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_110:1418854..1419979(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000009107 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNI | ||
Ensembl ID: | ENSLAFG00000029218 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.56 % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKFPGPLENQRLSFLLQKAISREAQMWKVNVCKMPTNQNVSPSQRDEVIQWLVKLKYQFNLYPETFALAS |
MKFPGPLENQRLSFL..KAISREAQMWKVNVCKMPTNQNVSPSQRDEVIQWLVKLKYQFNLYPETFALAS | |
Retrocopy | MKFPGPLENQRLSFLSEKAISREAQMWKVNVCKMPTNQNVSPSQRDEVIQWLVKLKYQFNLYPETFALAS |
Parental | SLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNW |
SLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNW | |
Retrocopy | SLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNW |
Parental | DLHTATPLDFLHIFHAIAVSARPQLLFSLPTLSPSQHLAVLTKQLLHCMACSQLLHFKGSMLALA-MVSL |
DLHTATPLDFLHIF.AIAVSARPQLLFSLPTLSPSQHLAVL.KQLLHCMACSQLLHFKGSMLALA..VSL | |
Retrocopy | DLHTATPLDFLHIFRAIAVSARPQLLFSLPTLSPSQHLAVL-KQLLHCMACSQLLHFKGSMLALA>VVSL |
Parental | EMEKLIPDWLPLTIELLQKAQMDSSQLIHCRELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRL |
EMEKLI.DW.PLTIELLQKAQMDSSQLIHCRELVAHHLSTLQSSLPLNSVYVY.PLKHTLVT.DK.VFRL | |
Retrocopy | EMEKLISDWFPLTIELLQKAQMDSSQLIHCRELVAHHLSTLQSSLPLNSVYVYCPLKHTLVTWDKRVFRL |
Parental | HSSSVPGPDFSKDNSKPEVPVRGTAAFCHHLPAASGCKHTSAKRKVEEMEVDDFYDGIKRLYNEDNASE- |
HSSSVPG.DFSKDNSKPEVPVRGTAAFCHHLPAASGCKHTSAKRKVEEMEVDDFYDGIKRLYNEDNASE. | |
Retrocopy | HSSSVPGQDFSKDNSKPEVPVRGTAAFCHHLPAASGCKHTSAKRKVEEMEVDDFYDGIKRLYNEDNASE< |
Parental | NVGSVCGTDLSRQEGHASPCPPLQPVSV |
NVGSVCGTDLSRQEGHASPCPPLQPVSV | |
Retrocopy | NVGSVCGTDLSRQEGHASPCPPLQPVSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014768 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000952 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000029218 | 1 retrocopy |
retro_lafr_295 ,
|
Macaca mulatta | ENSMMUG00000019904 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063015 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009907 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011865 | 1 retrocopy |