RetrogeneDB ID: | retro_lafr_777 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_38:4945345..4945680(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSLAFG00000015020 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.91 % |
Parental protein coverage: | 85.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LLGGIMDADENE-EGVQRALDFAISEYNKASNDKFHSRVVQVVRARKQIVSGVNYFLDVEIGRTTCTKSQ |
L.GG.MD.D.NE..G.Q..LDF..SEYNKAS..KFHS.VVQVV.A.K.I.SGVN.FLDVEI..TTCT.S. | |
Retrocopy | LVGGLMDKDVNE<VGLQGVLDFSLSEYNKASSGKFHSHVVQVVQACKHIMSGVN*FLDVEIRQTTCTESY |
Parental | PNLANCPFHDQPQLKKKALCSFQIYTVPWLGTTSLTKSSCQDA |
.NLA..PFHDQP...KKALCSF.IYTVPWLGTTS..KS.CQ.A | |
Retrocopy | LNLATYPFHDQPHPRKKALCSFNIYTVPWLGTTSMMKSNCQNA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010076 | 1 retrocopy | |
Felis catus | ENSFCAG00000024003 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000015020 | 1 retrocopy |
retro_lafr_777 ,
|
Myotis lucifugus | ENSMLUG00000028312 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000001122 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005195 | 1 retrocopy |