>retro_meug_1132
TCTCTCTTGTCCAAGGAGAGAAGAAGCATGTCTCAACTCTCTCTAACACAGTCTCCAGTCTCTCCCTTGGCTATTCAGGG
AATCCCGCTCCCAGCTCAGCTCACCACTTCCAGCTCTCCTGTGCATATTGACGTGGTGGGACACATGTTCACCAGTGGTC
TGGATATCCTCACCAAGTATCCAGACTCGAGAATAAGCTGTCTATTCAATGACACAGAGCCCATCATACTAGACAGTCCA
AAGCAACATTATTTCATTGACTGGGATGCAGAGACATTCAGATATATCCTTAGCTTCCTAGGGATGTCCTAACTCCTGCT
GCCAGATGACTTTAAGTACTTCAGCTTCTTGTATGAAAGGGCACATTACTACCAACAGTAGCCAATGGTAAGGCAGCTAG
ACTGCTGGAAGCAGGAGCAGGAACAGTGGTTCGGTGGTCAGTCCTATGAATGTCCTGTGGTTCATGTGATACCCAACCTG
GGTGAGCACATTGCCCTCAGTGGGGAGAAGGCACTTATTGAGCAAGTCTTCCCGAGGACCAGTGATGTCAAGTGCAACTC
TGTCAATGCTGGATGGAACCAGGACCCCACACATGTCATCTGCTTCCCACTGAATGGCTACTGCTGTCTCAACTCCGTGA
GG
ORF - retro_meug_1132 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.64 % |
Parental protein coverage: |
93.45 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SVSSVERRSMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLFN |
| S..S.ERRSMS.LSLT.SPVSPLA.QGIPLPAQLT.S..PVHIDV.GHM.TS.L..LTKYPDSRIS.LFN |
Retrocopy | SLLSKERRSMSQLSLTQSPVSPLAIQGIPLPAQLTTSSSPVHIDVVGHMFTSGLDILTKYPDSRISCLFN |
|
Parental | GTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPMVRELDRWKQEQ |
| .TEPI.LDS.KQHYFID.D.E.FRY.LSFL..S.LLLPDDFK.FS.LYE.A.YYQ..PMVR.LD.WKQEQ |
Retrocopy | DTEPIILDSPKQHYFIDWDAETFRYILSFLGMS*LLLPDDFKYFSFLYERAHYYQQ*PMVRQLDCWKQEQ |
|
Parental | EQRRRGQACECLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRL |
| EQ...GQ..EC.VV.V.P.LGE.IALSGEKALIE.VFP.T.DV.CNSVNAGWNQDPTHVI.FPLNGYC.L |
Retrocopy | EQWFGGQSYECPVVHVIPNLGEHIALSGEKALIEQVFPRTSDVKCNSVNAGWNQDPTHVICFPLNGYCCL |
|
Parental | NSVQ |
| NSV. |
Retrocopy | NSVR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1132 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1132 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.