RetrogeneDB ID: retro_meug_1263

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold344516:1115..1585(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC7A6OS
• Ensembl ID: ENSMEUG00000003614
• Aliases: None
• Description: solute carrier family 7, member 6 opposite strand [Source:HGNC Symbol;Acc:25807]

Sequence

>retro_meug_1263
CCCAAGAAATCTCAGCCACATGTGATCATCTCTAATTCACTCAGAGTCATCCGTGAGCCACAGGCCATCTGCAAGGATGG
AAAAGGCACAGGGCACCGAGGCAAGGAAGAAGGCTATGGTGATGACCTTAAGGACCTGGAGATGTCTGCGCCCAGATCAA
CTGAAGGCAAACTCTCTGGACAGCCCTACCGTCGGGACTGCGAGCTGGAAGCAGATGATCAAGCAGAGGAAATGGAAAAA
GATGATGACGATGATGAAGGAGATGAAAACACTGGGAATCACTGGCGTAATGAGTACCCTGATCAGAAGATGGAAGCAGT
GACACAGAGAGCATCGCAAGGTCTGATGGAGAATATGGCAGTTTTTCTGACGAGGAAACAAGTGTCATTAGACTTAGGAG
ATGGAACAAATATCCCTGTGATGTGCTCCAAGGGTGTGAGTACGAAGGTTTCCAGGACTTCCATTCAGAT

Alignment

ORF - retro_meug_1263 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.01 %
• Parental protein coverage: 58.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PPKSDPDVILCNSVRMIRERLAISKDGKGTNHREKEDEYVYDIYYMETSTPGWIESILSVQPYSEEWELV
          P.KS.P.VI..NS.R.IRE..AI.KDGKGT.HR.KE..Y..D....E.S.P...E..LS.QPY....EL.
Retrocopy PKKSQPHVIISNSLRVIREPQAICKDGKGTGHRGKEEGYGDDLKDLEMSAPRSTEGKLSGQPYRRDCELE

Parental  ADDHQAEEI---DDDDDEDENSENHWRNEYPDE-EEGSSDRESTRGSDEEYGSFSDEESSVIRPRKWNKY
          ADD.QAEE....DDDD..DEN..NHWRNEYPD..E.GSSD.ES...SD.EYGSFSDEE.SVIR.R.WNKY
Retrocopy ADD-QAEEMEKDDDDDEGDENTGNHWRNEYPDQ<EDGSSDTESIARSDGEYGSFSDEETSVIRLRRWNKY

Parental  PYDVLKEFEYDSSQDLDSD
          P.DVL...EY...QD..SD
Retrocopy PCDVLQGCEYEGFQDFHSD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1263 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1263 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007958	1 retrocopy	retro_amel_1808,
Macropus eugenii	ENSMEUG00000003614	6 retrocopies	retro_meug_1263 , retro_meug_1647, retro_meug_1823, retro_meug_849, retro_meug_884, retro_meug_979,
Myotis lucifugus	ENSMLUG00000005953	1 retrocopy	retro_mluc_346,