RetrogeneDB ID: retro_meug_1267

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold345586:202..1909(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MSN
• Ensembl ID: ENSMEUG00000015240
• Aliases: None
• Description: moesin [Source:HGNC Symbol;Acc:7373]

Sequence

>retro_meug_1267
ATCAGCGTTCGGGTGACCACCATGGATGCCGAGTTGGAGTTTGCCATCCAACCGAACACCACTGGAAAGCAACTCTTTGA
CCAGGTTGTGAAGACCATTGGCCTGAGAGAGGTCTGGTTCTTTGGCCTGCAGTACCAAGATACAAAGGGTTTCTCCACAT
GGCTGAAACTCAATAAAAAGGTGACGGCCCAGGATGTGCGGAAGGAGAGCCCCCTGCTCTTCAAATTCCGGGCCAAGTTT
TACCCTGAGGACGTGTCCGAGGAACTTATTCAGGACATCACCCAGCGCCTCTTCTTCCTGCAAGTGAAGGAGGGCATCCC
TAATGATGACATCTACTGCCCTCCAGAGACTGCCGTCTTGCTGGCCTCCTACGCAGTCCAGTCCAAGTATGGCGATTTCA
ACAAGGAGGTGCACAAGGCCGGCTACTTGGCTGGGGACAAGCTGCTGCCCCAGAGAGTCTTGGAGCAGCACAAGCTGAAC
AAGGACCAGTGGGAAGAGAGGATCCAGGTGTGGCATGAGGAGCACCGAGGCATGCTGAGGGAAGATGCTGTTCTGGAATA
TTTGAAGATAGCTCAGGACCTGGAGATGTACGGAGTGAATTACTTCAGCATCAAGAACAAGAAGGGTTCTGAGCTGTGGC
TGGGTGTGGATGCCCTGGGACTCAACATCTATGAACAGAACGACAGGCTGACTCCCAAGATTGGCTTCCCCTGGAGCGAA
ATCAGAAACATCTCATTCAATGATAAGAAATTTGTCATCAAGCCAATCGACAAGAAAGCTCCGGACTTTGTCTTCTACGC
CCCCCGTCTCCGCATCAACAAGCGCATCCTGGCACTGTGCATGGGGAACCACGAGCTGTACATGCGACGCCGCAAGCCAG
ACACTATTGAGGTGCAGCAGATGAAGGCCCAGGCTCGGGAGGAGAAACACCAGAAGCAGATGGAAAGGGCCCTCCTGGAG
AATGAAAAGAAGAAGCGTGAGCTGGCTGAGAAGGAGAAGGAAAAGATCGAGAGGGAGAAGGAGGAGCTAATGGAGAAACT
GAGACAGATTGAGGAACAGACGAAGAAGGCTCAGCTAGAACTGGAAGAGCAGACTCGGAAAGCTCTGGAGCTGGAAGAGG
AGCGGAAGCGGGCCCAGGATGAGGCTGAAAAGCTGGCCAAGGAGCGGCAGGAGGCTGAGGAGGCTAAAGAGGCCCTGCTC
CGGGCCTCTCGGGACCAAAAGAAGACCCAGGAGCAGCTGGCCTCCGAGATGCCAGAGCTGACAGCGCGGATCAGCCAGTT
GGAGATGGCCCGACAGAAGAAGGAGAGTGAGGCCGTGGAGTGGCAGCAGAAGGCCCAGATGGTCCAGGAGGACCTGGAGA
AGACCCGGGCTGAGCTGAAGAATGCCATGAGCACCCCTCATGAGAATGAGCAAGATGATGAGCAGGATGAGAATGCAGCT
GAAGCCAGTGCTGAACTACGGGCTGAGGCTTCCACCAAGGACCGCAGTGAGGAAGAGCGGACCACTGAGGCCGAGAAGAC
TGAGCGGGTCCAGAAACACCTGAAGGCCCTGACCTCAGAGCTGGCCAACGCCCGAGATGAGACTAAGAAGACAGCCAACG
ACATGATTCATGCAGAGAACATGCGTCTGGGGCGTGACAAGTATAAGACCCTGCGTCAGATCCTCCAAGGCAATACCAAG
CAGCGAATTGATGAATTTGAGTCCATG

Alignment

ORF - retro_meug_1267 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.77 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTM-LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES
          I.VRVTTMDAELEFAIQPNTTGKQLFDQVVKT..LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES
Retrocopy ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES

Parental  PLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKA
          PLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGI.NDDIYCPPETAVLLASYAVQSKYGDFNKEVHKA
Retrocopy PLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGIPNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKA

Parental  GYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGS
          GYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGS
Retrocopy GYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGS

Parental  ELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALC
          ELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALC
Retrocopy ELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALC

Parental  MGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERALLENEKKKRELAEKEKEKIEREKEELMEKLRQI
          MGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERALLENEKKKRELAEKEKEKIEREKEELMEKLRQI
Retrocopy MGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERALLENEKKKRELAEKEKEKIEREKEELMEKLRQI

Parental  EEQTKKAQLELEEQTRKALELEEERKRAQDEAEKLAKERQEAEEAKEALLRASRDQKKTQEQLASEMAEL
          EEQTKKAQLELEEQTRKALELEEERKRAQDEAEKLAKERQEAEEAKEALLRASRDQKKTQEQLASEM.EL
Retrocopy EEQTKKAQLELEEQTRKALELEEERKRAQDEAEKLAKERQEAEEAKEALLRASRDQKKTQEQLASEMPEL

Parental  TARISQLEMARQKKESEAVEWQQKAQMVQEDLEKTRAELKNAMSTPHENEQDDEQDENAAEASAELRAEA
          TARISQLEMARQKKESEAVEWQQKAQMVQEDLEKTRAELKNAMSTPHENEQDDEQDENAAEASAELRAEA
Retrocopy TARISQLEMARQKKESEAVEWQQKAQMVQEDLEKTRAELKNAMSTPHENEQDDEQDENAAEASAELRAEA

Parental  STKDRSEEERTTEAEKNERVQKHLKALTSELANARDETKKTANDMIHAENMRLGRDKYKTLRQIRQGNTK
          STKDRSEEERTTEAEK.ERVQKHLKALTSELANARDETKKTANDMIHAENMRLGRDKYKTLRQI.QGNTK
Retrocopy STKDRSEEERTTEAEKTERVQKHLKALTSELANARDETKKTANDMIHAENMRLGRDKYKTLRQILQGNTK

Parental  QRIDEFESM
          QRIDEFESM
Retrocopy QRIDEFESM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1267 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1267 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000147065	1 retrocopy	retro_hsap_3153,
Gorilla gorilla	ENSGGOG00000001823	1 retrocopy	retro_ggor_1359,
Macropus eugenii	ENSMEUG00000015240	1 retrocopy	retro_meug_1267 ,
Oryctolagus cuniculus	ENSOCUG00000000149	1 retrocopy	retro_ocun_1173,
Pongo abelii	ENSPPYG00000020419	1 retrocopy	retro_pabe_2623,
Tursiops truncatus	ENSTTRG00000002946	1 retrocopy	retro_ttru_173,