RetrogeneDB ID: retro_meug_1277

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold3495:29195..29654(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: APRT
• Ensembl ID: ENSMEUG00000010375
• Aliases: None
• Description: adenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:626]

Sequence

>retro_meug_1277
GACATCAGTTCTTTGCTGAAGGACCCAGATGACTTCAGGGCTTCCATTTAGCTTTTGGCTGATCACCTGAAAGAAAATCA
CAAAACAAAGATCGATTATATTGTTGGCTTGGATGCTTGGGGTTTCCTGTTTGGTCCCTCCCTGGCCCAGAAACTCGGAA
TAGGCTTTGTGCTCATTCGAAAGCGAGGGAAGCTTCCTGGGCCCACCATATCCACCAGTTACTCCTTGGAATATGGCGAG
GCAGAGGTGGAGATCCAGAAAGATGCCATAGAACCTGGCCAGAAAGTGGTGATCATGGATGACCTGATGGCCACTGGAGG
TACCATGGGTGCAGCCTGCAAGCTGATGCAGAGTCTGAAAGCCAATGTGCTGGAGGCCCTGACCCTAGTAGAGGTGACAT
CCCTGAAGGGGAGAGAGAAGCTGACCCCAGTGCCCTTCTTCTCCTTGCCGCAGCACAGC

Alignment

ORF - retro_meug_1277 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.81 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DISPLLKDPDAFRASIELLADHLKEKHKTKIDYIVGLDARGFLFGPSLAQKLGIGFVLIRKRGKLPGPTI
          DIS.LLKDPD.FRASI.LLADHLKE.HKTKIDYIVGLDA.GFLFGPSLAQKLGIGFVLIRKRGKLPGPTI
Retrocopy DISSLLKDPDDFRASI*LLADHLKENHKTKIDYIVGLDAWGFLFGPSLAQKLGIGFVLIRKRGKLPGPTI

Parental  STSYSLEYGEAELEIQKDAIEPGQKVVIVDDLMATGGTMGAACKLMQSLKANVLEALTLVELTSLKGREK
          STSYSLEYGEAE.EIQKDAIEPGQKVVI.DDLMATGGTMGAACKLMQSLKANVLEALTLVE.TSLKGREK
Retrocopy STSYSLEYGEAEVEIQKDAIEPGQKVVIMDDLMATGGTMGAACKLMQSLKANVLEALTLVEVTSLKGREK

Parental  LTPVPFFSLLQYN
          LTPVPFFSL.Q..
Retrocopy LTPVPFFSLPQHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1277 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1277 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000000639	1 retrocopy	retro_btau_511,
Macropus eugenii	ENSMEUG00000010375	1 retrocopy	retro_meug_1277 ,
Mus musculus	ENSMUSG00000006589	3 retrocopies	retro_mmus_1464, retro_mmus_3143, retro_mmus_440,