RetrogeneDB ID: retro_meug_1293

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold358431:1628..1937(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PQBP1
• Ensembl ID: ENSMEUG00000004165
• Aliases: None
• Description: polyglutamine binding protein 1 [Source:HGNC Symbol;Acc:9330]

Sequence

>retro_meug_1293
GATCCCAGATACAAAAGGCTGGAGAGGAAGGAGGCCAAGGAGTGTCACTACCATCGCCACGAGGAGCTGACCCCTTATCC
CAAGAGCAAGAAAGACAGCCACAAGGATGAAGAGCTGAATCCCATTTACCTCAGCACCTATTTGGATGCTTCCTGGGGCA
CCTGGTCAACAGGTTTCTCCAAGAAAAGCAAGACAAAGATGAGTGCAGACACCATGGCAACCAGACCCCTGTTTGAGTAG
CGACTATACCCATCCCTAGGAGCAGTTCTTTGGGCCAACACCAAGGCTTTCAGGGCCAAGCCACAGGAT

Alignment

ORF - retro_meug_1293 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.62 %
• Parental protein coverage: 52.53 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DRGYEKLEREEMKERRYHRREELAPYPKGKKAASRKDEELDPMDPSAYSDAPRGTWSTGLPKRNEAKTGA
          D..Y..LER.E.KE..YHR.EEL.PYPK.KK..S.KDEEL.P...S.Y.DA..GTWSTG..K....K..A
Retrocopy DPRYKRLERKEAKECHYHRHEELTPYPKSKKD-SHKDEELNPIYLSTYLDASWGTWSTGFSKKSKTKMSA

Parental  DTTAAGPLFQQRPYPSPGAVLRANAEASRAKQQD
          DT.A..PLF..R.YPS.GAVL.AN..A.RAK.QD
Retrocopy DTMATRPLFE*RLYPSLGAVLWANTKAFRAKPQD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1293 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1293 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004165	2 retrocopies	retro_meug_1293 , retro_meug_435,
Mus musculus	ENSMUSG00000031157	1 retrocopy	retro_mmus_891,
Rattus norvegicus	ENSRNOG00000007766	1 retrocopy	retro_rnor_2326,
Tupaia belangeri	ENSTBEG00000008669	1 retrocopy	retro_tbel_1908,