RetrogeneDB ID: retro_meug_13

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold839:46275..48159(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000007067
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000008367
• Aliases: None
• Description: None

Sequence

>retro_meug_13
TGGGAGTCAAGTCCAGAAACCAGAGAGTCAACTCCAAAGCAAGGATTTGCTGAGGAAGAGGCATATCGGTGGATGATAAT
GGATGACCCTTGGGATAAGTTGGGAAAAACCTGGGAGGAGCATGACGACATGTTGGAGAAGCCTCAGGGAAACAAGGAGA
GACTTTCTGAGAAAATGAACATTCCCTATGAGAACATTTTTACTGAGGGGAGAGACCAAGAATTTAAAGACTTGGGAGGA
AGGTTCCATTTGAGATCATCTTTCAGTATGCAACAAAACATTCTTAGTGGAAAGACTTCTCAAATATGGGACAGACATGG
AAAGAGATATAAACAAAATTCACACTTAATTAATCACCTGAAAATCTATTCAGGGAAGAAGTGTCATAAATGTAATGATT
GTGGAAAAACCTTTGCCCGGATTTCACACTTTACTGAACATCTGAAAATTCATACTGGAGAGAAACCCTATAAATGTAAT
GACTGTGGGAAAGCCTTTGCCCGAATTTCTTGCCTTAATAGACATCAGAGAATTCATACTGGAGAGAAACCCTATAAATG
TAATGACTGTGGAAAAGCCTTTTTCTATATATCACAACTTACTGGGCATCAGAGAATTCATACTGGAGAGAAACCATACA
AATGTAATGAATGTGGGAAAATGTTTGGCCATAGCAAATCCCTTACAGTACATCAGAGAATTCATACTGGAAAGAAACCC
TATAAATGCACTGAATGTGGGAAAGCCTTCAGTCAGGGCTCAACTCTTTCTCTCCATCAGAGAACTCACAGTGGTGAGAA
GCCCTATAAATGTAATAAATGTGGGAAAGTTTTCAGTCACCGGTCATACCTTATCCGGCATCATGTAGTTCACACTGGAG
AAAAACCTTATGAATGTAAAGAATGTTGGAAATCCTTCCGACTCAGCTCATCCCTTTCACTTCATCAAAGAATTCATACT
AGAGAAAAACCTTATGAATGTGATGAATGTGGAAAAACTTTCACTCTGGGCTCTTACCTTTTGTTGCATCAGAAAACTCA
TATTACAGAGAAGTCCTATAAATGTGATGAATGTGGAAAAGCCTTCAACAATAGCTCTTCCCTTACTAAGCATGAGAGGA
CTCATACTGGAGAGAAACCCTATAAGTGTCATGATTGTGAAAAGGCTTTCAGCAGAAAATCATCCCTTCCTAAACACCAG
AGACTTCACCACAGTGGGGAGCTACCCTTTAAATGTGATGAATGTGGAAAAGGCTTTATCTGGGTTTCACAACTTACTGA
ACACCAGAGAGTTCATACTGGAGAGAAACCCTATAAATGCCATGAATGTGGGAAGGCCTTCAACATCAGCACATCCCTGA
TTAAGCATAAGAAATGTCACACTGGAGAGAAGCCCTATAAATGCAATGAATGTGAAAGAGCCTTTTTTGACAGCTCCACT
CTTATTGTACATCAGAGGACTCATACTGGAGAAAAACCCTATAAATGTGATAAATGTGGCAAAGCCTTCAGCCACAGTTC
ATCCCTCAGTCAACACCAGAGAATTCATAGTAGAGAAAAATCTTATCACTGTAGTGAATGTGGGAAGGCCTTTACTCGCT
TTTCCGGACTCAATATACATCAAAGAATTCATACTGGAGAGAAACCATACAAATGTGAAGAATGTGGCAAAGCCTTCACC
AATGGCTCCTCTCTTAATCAGCATAAGAAAATTCATACAGGAGAGAATTCCTATAAATGCAGTGAATGTGGAAAAGCCTT
TAGACAGAGTTCACGCCTTATACAACACCAGAGAGTTCACACTGGGGAGAAACCCTATATGTGTACCAAATGTGGGAAAG
CCTTCACTAGTGGTTCATCTCTTGCAAGACATCAGAGAATTCAT

Alignment

ORF - retro_meug_13 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.42 %
• Parental protein coverage: 90.34 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKACTDNSLIDHQQIKVERKHYEC-ECGQTSHL--SLISHQRLLSRNKSHECHKSDKTFCCTSHLTRHEK
          K........I....I..E....E....G...HL..S....Q..LS...S.......K.....SHL..H.K
Retrocopy KERLSEKMNIPYENIFTEGRDQEFKDLGGRFHLRSSFSMQQNILSGKTSQIWDRHGKRYKQNSHLINHLK

Parental  IHVGEKIYECNQCGKSFKKIC-LTLHQRIHTGEKPYACNQCGKGFRRSCNLAEHQRIHTEEKPYECNHCG
          I..G.K...CN.CGK.F..I...T.H..IHTGEKPY.CN.CGK.F.R...L..HQRIHT.EKPY.CN.CG
Retrocopy IYSGKKCHKCNDCGKTFARISHFTEHLKIHTGEKPYKCNDCGKAFARISCLNRHQRIHTGEKPYKCNDCG

Parental  KAFD--PALNYHRRTHIGKKPYECNHCGKAFICSSSLSVHQRIHTGEKPYECNQCGKAFRSSSAL-IHQS
          KAF.....L..H.R.H.G.KPY.CN.CGK.F..S.SL.VHQRIHTG.KPY.C..CGKAF...S.L..HQ.
Retrocopy KAFFYISQLTGHQRIHTGEKPYKCNECGKMFGHSKSLTVHQRIHTGKKPYKCTECGKAFSQGSTLSLHQR

Parental  IHTGKKPYECNHCGKAFICSSRLSVHQTVHTGEKPYECNHCGKAF--DPALNYHQSTHTGKKPYECNHCG
          .H.G.KPY.CN.CGK.F...S.L..H..VHTGEKPYEC..C.K.F.....L..HQ..HT..KPYEC..CG
Retrocopy THSGEKPYKCNKCGKVFSHRSYLIRHHVVHTGEKPYECKECWKSFRLSSSLSLHQRIHTREKPYECDECG

Parental  KAFIRRSSLSVHQRIHTGEKPYECNHCGKAFKCSSSLSVHQRIHTGEKPYECNHCGKAFICKSSLSVHQR
          K.F...S.L..HQ..H..EK.Y.C..CGKAF..SSSL..H.R.HTGEKPY.C..C.KAF..KSSL..HQR
Retrocopy KTFTLGSYLLLHQKTHITEKSYKCDECGKAFNNSSSLTKHERTHTGEKPYKCHDCEKAFSRKSSLPKHQR

Parental  I-HTGEKPYECNQCGKAFRCSSSLSVHQRIHTGEKPYECNHCGKAFD--PALNYHQSTHTGKKPYECNHC
          ..H.GE.P..C..CGK.F...S.L..HQR.HTGEKPY.C..CGKAF.....L..H...HTG.KPY.CN.C
Retrocopy LHHSGELPFKCDECGKGFIWVSQLTEHQRVHTGEKPYKCHECGKAFNISTSLIKHKKCHTGEKPYKCNEC

Parental  GKAFICSSSLSVHQRIHTGEKPYECN-CGKAFSSNSSLSVHQRIHTGEKPYECNQCGKAFRSSWSLNYHQ
          ..AF..SS.L.VHQR.HTGEKPY.C..CGKAFS..SSLS.HQRIH..EK.Y.C..CGKAF.....LN.HQ
Retrocopy ERAFFDSSTLIVHQRTHTGEKPYKCDKCGKAFSHSSSLSQHQRIHSREKSYHCSECGKAFTRFSGLNIHQ

Parental  STHTGKKPNECNHCGKAFICSSSLSVHQRIHTGEKPYECN-CGKAFSSNSSLSVHQRIHTGEKPYECNQC
          ..HTG.KP..C..CGKAF...SSL..H..IHTGE..Y.C..CGKAF...S.L..HQR.HTGEKPY.C..C
Retrocopy RIHTGEKPYKCEECGKAFTNGSSLNQHKKIHTGENSYKCSECGKAFRQSSRLIQHQRVHTGEKPYMCTKC

Parental  GKGF--DTALNYHQSIH
          GK.F.....L..HQ.IH
Retrocopy GKAFTSGSSLARHQRIH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_13 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_13 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008367	1 retrocopy	retro_meug_13 ,
Myotis lucifugus	ENSMLUG00000016526	1 retrocopy	retro_mluc_321,
Monodelphis domestica	ENSMODG00000010793	1 retrocopy	retro_mdom_468,