RetrogeneDB ID: | retro_meug_1323 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold36789:12065..12887(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 65.58 % |
Parental protein coverage: | 82.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
M..TVKD.LI.NVLKED.VPQN...VV.V.AVGM.CAIS.LTK.L.D.L.LVDV.EDK.KGEMM..QH.. | |
Retrocopy | MCATVKDKLIFNVLKEDLVPQN--LVVEVSAVGMTCAISILTKDLTDKLLLVDVKEDKAKGEMMAFQHCR |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFLK.PKI.SGKD.SV..NS..V.V...A..QE.ES.LNLVQ.NVNIFKF.IPNI.KYS.NCKLLIVSNP | |
Retrocopy | LFLKPPKIISGKDCSVYINSEVVTVMTRAHHQEEESHLNLVQHNVNIFKFLIPNIIKYSSNCKLLIVSNP |
Parental | VDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGV |
VDILTY...K...FPK..VIGS.CNLDSA.F.YLM...LGVHS..CH.WV.GE..DSSVP.WSGVNLAGV | |
Retrocopy | VDILTYMTCKVNVFPKSCVIGSDCNLDSA*FYYLME*ILGVHSSHCHEWVFGEYEDSSVPAWSGVNLAGV |
Parental | SLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAI-GLSVADLAESIMKNLRRVHPIS |
SLKNLHP.LGTD.D.ENWKDV..QVVESAYE...L.....W.I.G..............R..H..S | |
Retrocopy | SLKNLHPPLGTDADSENWKDVYIQVVESAYETEELHFLGHWLICGIQLPPQLRAYLALMRMSHLVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |