RetrogeneDB ID: retro_meug_15

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold71525:4572..4995(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000011327
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007772
• Aliases: None
• Description: None

Sequence

>retro_meug_15
ATCATCAACTATTCAAAGGGCATGAATCGTAAGAGAGTTGAAAAGATCCTGAGGAAGGCAGCAAAAGTCTGGAGAAGTGT
GACACCCCTGAAGTTTCAAAGAGTGTATAAACAAGATTCTGACATTGAGTTTGCTTTTCTGTCTGGAGATCATGGAGATG
CCTACCCCTTTGATGGAGAAGGAAACATTCTAGCTCATGCTTTTGCCCTAAGTCCTGACTACCAAGGAGCTGTCCACTTT
GACAGTGAAGAAGAATGGTCATATTTTGAGGAGGGAACTAACTTCTTTCTGGTGGCTGTTCTTAAGATAAGCCATACCCT
GGGCCTGGGACACTCTCAGGATTCAGACTCTATCACATTCACCAACTATCAATATCAGGACCCAAGACTCTTCAGGATCA
GTGATGATGATATAAAAGGGACC

Alignment

ORF - retro_meug_15 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.14 %
• Parental protein coverage: 64.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IINYPRGMNHRTVEKILRKAAEVWSSVTPLKFRRVYKQHSDIEFAFLAGDHGDAYPFDGEGNTLAHAFAP
          IINY..GMN...VEKILRKAA.VW.SVTPLKF.RVYKQ.SDIEFAFL.GDHGDAYPFDGEGN.LAHAFA.
Retrocopy IINYSKGMNRKRVEKILRKAAKVWRSVTPLKFQRVYKQDSDIEFAFLSGDHGDAYPFDGEGNILAHAFAL

Parental  VPNYQGAIHFDRDEEWSYYDEGVNLFVVAVHEIGHALGLGHSQDSDSIMFPNYQYQDPKFFRLSDDDIIG
          .P.YQGA.HFD..EEWSY..EG.N.F.VAV..I.H.LGLGHSQDSDSI.F.NYQYQDP..FR.SDDDI.G
Retrocopy SPDYQGAVHFDSEEEWSYFEEGTNFFLVAVLKISHTLGLGHSQDSDSITFTNYQYQDPRLFRISDDDIKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_15 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_15 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007772	12 retrocopies	retro_meug_1141, retro_meug_1271, retro_meug_1415, retro_meug_15 , retro_meug_1655, retro_meug_1863, retro_meug_2031, retro_meug_2158, retro_meug_939, retro_meug_948, retro_meug_956, retro_meug_995,