RetrogeneDB ID: retro_meug_1522

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold43534:6487..7558(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FMO1
• Ensembl ID: ENSMEUG00000004428
• Aliases: None
• Description: flavin containing monooxygenase 1 [Source:HGNC Symbol;Acc:3769]

Sequence

>retro_meug_1522
ATTGTCTGCAATGTGAAAAAATGTCCAGATTTCTGTATCTCTAGCCAGTGGAAAGTAGCCACTGAACATGAATGAAAGCA
AAAGTCAGTCATATTTGATGCTGTCATAGTCAGCACTGGTTATGTCACTGATCCGTTTTTGCCACTAGATACTTTGCCGG
GTATCTCCACCTTTAAAGGTAGGTACTTTCACAGAAGACAGTACAAGCATCCAGATCTGTTCAAGAATAAGAGAGTCCTT
GTGATTGTCATGGGGAATTCTGGCATAGATATTGCTGTGGAGGCCAACCGCGTGTCTAGAAAGGTGTTGCTCAGCACCAC
TGGAGGTCCATAACTGATAAATTGAATTCTTGAGCACGGATTTTCTTGGTATATGGTACTCACTTTTCAATTTCAAAGCA
CATTAAGAAATTCCCTCTGAACTTCAGTTGTAAACTGGCTATTTGGCAAAAAGGCAAATAGCTGTACTGATCATGCAAAC
TATGGTTTGGTTCCATAAAACAAGACTTTCGTAAGAGAACCTATATTAAATGGTGGGCTCCCAGGATGTATAATTACTGT
GAAGGTTCTGATGAAACCCGGTGTGGAGAAAGTAAAGGAAATTTCTGTAGTGTTTAAGAATACTCCAGAAGAAGAGCCTA
TTGATATAATTGTCGTGGCCACAGGATATACTTTTGCTTTCCCTTTCCTTGATGAGTCTATAGTGAAAGATGAAAATAAT
CAGGTCTCTTTGCATAAGTACATATTCACTGCACATTTAGAAAAACCAGCTCTGGCTGTCATTGGTCTCATCAAGCCTTC
ACGATCTTTGGTTTGCATATCAGAAGTATAAGCTCAATGGGTCACAGGAGTCCTAAAGGGTTTGAATAAACTACCACTAC
CAGAGGCCAGGAGAGAAGACATTAACACAAAGAAAGCAAATAAAGCTACTGGGTTTGCTTTACACTTCAATCATGTTTTG
CAAACAGATTGCATCACATATGTAGATGAGCTCTTGTTCTTCATCAATGCAAAATCCAACTTGTTGTCCCTGCCCCTGGA
GGATCTGCTGCTGGCTTTTAAGGTTTACTTT

Alignment

ORF - retro_meug_1522 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.95 %
• Parental protein coverage: 67.23 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IVCNVKKCPDFSTSGQWEVTTEHEGKQESAIFDAVMVGTGYLTNPFLPLDTLPGINTFKGKYFHSREYKH
          IVCNVKKCPDF..S.QW.V.TEHE.KQ.S.IFDAV.V.TGY.T.PFLPLDTLPGI.TFKG.YFH.R.YKH
Retrocopy IVCNVKKCPDFCISSQWKVATEHE*KQKSVIFDAVIVSTGYVTDPFLPLDTLPGISTFKGRYFHRRQYKH

Parental  LDIFKDKRVLVIGMGNSGTDIAVEASHVAKKVFLSTTGGAWLISRVFDHGYPWDMVFTTRFQSALRSYLP
          .D.FK.KRVLVI.MGNSG.DIAVEA..V..KV.LSTTGG..LI.....HG..W.MV.T..FQS.LR..L.
Retrocopy PDLFKNKRVLVIVMGNSGIDIAVEANRVSRKVLLSTTGGP*LIN*ILEHGFSWYMVLTFQFQSTLRNSL*

Parental  TSVVNWLFGQKANSWFDHANYGLVPEKRNFLREPILNDELPGQIISGKVLIKPKVEKVKENSVVFKNTPE
          TSVVNWLFG.KANS..DHANYGLVP....F.REPILN..LPG.II..KVL.KP.VEKVKE.SVVFKNTPE
Retrocopy TSVVNWLFGKKANSCTDHANYGLVP*NKTFVREPILNGGLPGCIITVKVLMKPGVEKVKEISVVFKNTPE

Parental  EEPIDIIVLATGYTFAFPFLDESVVKVENNQASLYKYIFPAHLEKPTLAVIGLIKPLGALTCTTEVQARW
          EEPIDIIV.ATGYTFAFPFLDES.VK.ENNQ.SL.KYIF.AHLEKP.LAVIGLIKP...L.C..EV.A.W
Retrocopy EEPIDIIVVATGYTFAFPFLDESIVKDENNQVSLHKYIFTAHLEKPALAVIGLIKPSRSLVCISEV*AQW

Parental  VTRVLKGLNKLPPPEVMREDINTRKANKPTGFGLHFDQVLQTDCVPYLDELLSFINAKPDLLSLLLKDPL
          VT.VLKGLNKLP.PE..REDINT.KANK.TGF.LHF..VLQTDC..Y.DELL.FINAK..LLSL.L.D.L
Retrocopy VTGVLKGLNKLPLPEARREDINTKKANKATGFALHFNHVLQTDCITYVDELLFFINAKSNLLSLPLEDLL

Parental  LAFKVFF
          LAFKV.F
Retrocopy LAFKVYF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1522 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1522 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004428	3 retrocopies	retro_meug_1127, retro_meug_1522 , retro_meug_1794,