>retro_meug_1528
GCTTCCAAGATGCTGCAGACTCTATATGATTACTTCTGGTGGGAGTAAGTGTGGCTGCCTATGAACCTGACCTGGGCTGA
CCTGGAGGACCATGATGGGCACGTCTATGCCAAAGCTTCTGACCTTTACGTCACCTAGCCCCTCGCCTTACTCTTCCTCA
TTGTCAGATAATTCTTTGAGATTTATTTGGCAACACCGCTGGCTACCCTCCTAAATATGAAGGAGAAGACTCGACTTTGA
GCATCCCCCAACCCAACTTTGGAGAATTTTTATTGTACCGGTGGCAAACACCACAAATAGGCAGAGGTGGAGTTCTTGTC
TCAGCCGAGTGGGCTCTCAAGCTGTCAGGTGGAGCCATGGTTCCACAGATGCCAAAATCAGGACTGGCCAATCCTGCTCA
AGAAATTCCGGGAGGGCACCTTTTATCTTATTGCTTTTATTGCTGGCATGGCTGTCATTGTGGATAAACCTTGGTTCCAT
GACATGAAGGAAGTATTAAAAGGTTATCCCATACAGTCCACCATCCCTTCCCAGTACTGGTATTACATGATCAAACTCTC
CTTTTACTGGTCCCTACTCTTCAGTATTGCTTCTGATGTTAAACTGAAAGGATTTCAAAGAGCAGGTGATCCACCATGTG
ACCACCATCATCCTCATCAGCTTCTCCTGGTTTGCCGACTACATCTGGGCAGGGACGCTCATCATGGCTCTCCATGACTT
CTCTGACTACCTGCTAGAATCAACCAAGATGTTTAATTATGCCAGATGGAAAAAC
ORF - retro_meug_1528 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.65 % |
Parental protein coverage: |
65.83 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | AGRMLQTLYDYFWWERLWLPVNLTWADLEDRDGRVYAKASDLYITLPLALLFLIVRYFFEIYVATPLAAL |
| A..MLQTLYDYFWWE..WLP.NLTWADLED.DG.VYAKASDLY.T.PLALLFLIVR.FFEIY.ATPLA.L |
Retrocopy | ASKMLQTLYDYFWWE*VWLPMNLTWADLEDHDGHVYAKASDLYVT*PLALLFLIVR*FFEIYLATPLATL |
|
Parental | LNVKEKTRLRASPNPTLENFYCTSGKHPKQAEVELLSRQSGLSSRQVERWFRRRRNQDRPSLLKKFREAS |
| LN.KEKTRL.ASPNPTLENFYCT.GKH.K.AEVE.LS..SGLSS.QVE.WF.R..NQD.P.LLKKFRE.. |
Retrocopy | LNMKEKTRL*ASPNPTLENFYCTGGKHHK*AEVEFLSQPSGLSSCQVEPWFHRCQNQDWPILLKKFREG- |
|
Parental | WRFTFYLIAFIAGMAVIVDKPWFYDMKEVWKGYPIQSTIPSQYWYYMIELSFYWSLLFSIASDVKR-KDF |
| ...TFYLIAFIAGMAVIVDKPWF.DMKEV.KGYPIQSTIPSQYWYYMI.LSFYWSLLFSIASDVK..KDF |
Retrocopy | ---TFYLIAFIAGMAVIVDKPWFHDMKEVLKGYPIQSTIPSQYWYYMIKLSFYWSLLFSIASDVKL>KDF |
|
Parental | KEQVIHHVATIILISFSWFANYIRAGTLIMALHDSSDYLLESAKMFNYAGWKN |
| KEQVIHHV.TIILISFSWFA.YI.AGTLIMALHD.SDYLLES.KMFNYA.WKN |
Retrocopy | KEQVIHHVTTIILISFSWFADYIWAGTLIMALHDFSDYLLESTKMFNYARWKN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1528 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1528 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.