RetrogeneDB ID:

retro_meug_1531

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold437601:307..637(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMEUG00000015988
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_meug_1531
GGAGAAGAGAAAACATATAGTGGGTGAGAGGGCCCAGATGCTATGTGTGTGAAATTGATATCTTCTGATGGTCATGAATT
TATTATGAAAAGGGAGCATACTTTAACATCAGGAACAATAAAAGCCATGTTAAGTGGCCCAGGTCAGTCTGCTGAAAATG
AAACCAATGAGGTTAATTTTAGAGAAATTCCATCACATGTGCTGTCAAAAGTATGCATGTATTTTACCTACAAGGTTCGC
TACACTAACAACTCTACAGAGATTCCTGAATTCTCAATTGCACCTGAAATTGCACTGGAATTGCTGATGGCTGCGAACTT
CCTAGATTGT

ORF - retro_meug_1531 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.45 %
Parental protein coverage: 99.1 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPXQFAENEANEVNFREISSHVLSK
GEEKTY.G.EGPDAM.VKLISSDGHEFI.KREH.LTSGTIKAMLSGP.Q.AENE.NEVNFREI.SHVLSK
RetrocopyGEEKTYSG*EGPDAMCVKLISSDGHEFIMKREHTLTSGTIKAMLSGPGQSAENETNEVNFREIPSHVLSK
ParentalVYMYFTYKIHYTNSSTEIPEFPIALEIALELLMAVNFLDC
V.MYFTYK..YTN.STEIPEF.IA.EIALELLMA.NFLDC
RetrocopyVCMYFTYKVRYTNNSTEIPEFSIAPEIALELLMAANFLDC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1531 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1531 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000081523 retrocopies
Erinaceus europaeus ENSEEUG000000051573 retrocopies
Macropus eugenii ENSMEUG00000015988 11 retrocopies



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