RetrogeneDB ID: | retro_meug_16 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold4854:25843..26500(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000008100 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSMEUG00000015460 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] |
Percent Identity: | 64.45 % |
Parental protein coverage: | 88.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCD |
V......L..EERNLLSVAYKNV.GARR.SWR.ISSIEQK....G.E.K..M.R.YR...E.EL...C.D | |
Retrocopy | VTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQD |
Parental | ILDVLDKHLIPAANTG--ESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTH |
.L..LD..LI........ESKVFY.KMKGDY.RYLAE.ATG..R....E.S..AY..A..I......PTH | |
Retrocopy | VLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTH |
Parental | PIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQG |
PIRLGLALN.SVFYYEI.N.P..AC.LAK.AFDDAIAELDTL.E.SYKDSTLIMQLLRDNLTLWTSD.Q. | |
Retrocopy | PIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD |
Parental | D |
D | |
Retrocopy | D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014442 | 7 retrocopies | |
Macropus eugenii | ENSMEUG00000015460 | 12 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014607 | 2 retrocopies |