RetrogeneDB ID: retro_meug_1960

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold74562:2..523(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000013840
• Aliases: None
• Description: None

Sequence

>retro_meug_1960
CTGGGCCACGTGAGTGGCAAAGCTAGAAAGGAGGGGACCTTTCTTTTCCGCCTTCGGGTACTGGCCTAGATGCTGCAGGT
GGCCCCTTGGAATCGGCTGTCCTTCACCCTGCGTTGGCTCTGACAGGACTTCCAGCAGGAACTCAGCCCTCCGCCTCCCC
AGCACATGCCTCTTGCTTTTGACCATTTGCAACCAGACCTCACTCACAGAGGAAGGAGAGGGGTGGCCATGGGAGCAGAC
AGGGTCTTCTGCTCTCTCTGTCAACAGTTAGTCCAGGATAAGGTGGACCCCTGTGCCATCCTCACCTCAACTGTCTACTG
AATGCTCATCTCATCTGCGTTGCTGAAGAATTTCTTCAAGAGGAATCTCAACAGCTTCTGCCCCTGAAGGGCTGCAGCTC
AGGCTGTAACAATACTTTGTTGTGGGGAGACCTGATCCATCTACACAAGGCATATTCTAATAATGTGGAAGACGTGGAAT
TCGACCTTGAAGAGACACACTGGACAGATGAACTGAAGACT

Alignment

ORF - retro_meug_1960 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.98 %
• Parental protein coverage: 64.04 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LAHV--RQSKGGTFLFHLRVLAQMLQVAPWNRLPLTLRWLRQDFQQELSPPPPQHMPLAFGPLQQASLPE
          L.HV.....K.GTFLF.LRVLA.MLQVAPWNRL..TLRWL.QDFQQELSPPPPQHMPLAF..LQ...L..
Retrocopy LGHVSGKARKEGTFLFRLRVLA*MLQVAPWNRLSFTLRWL*QDFQQELSPPPPQHMPLAFDHLQP-DLTH

Parental  QGE--VGMGADGVFCSLCQQLVQDK-DGPLCCPHPNCLLNAHLICLAEEFLQEEPQQLLPLKGCCPGCKN
          .G...V.MGAD.VFCSLCQQLVQDK..GPLC.PH.NCLLNAHLIC.AEEFLQEE.QQLLPLKGC..GC.N
Retrocopy RGRRGVAMGADRVFCSLCQQLVQDK<GGPLCHPHLNCLLNAHLICVAEEFLQEESQQLLPLKGCSSGCNN

Parental  TLLWGDLIHLHQAYSNNVEDVQSDLEETHWTDELKT
          TLLWGDLIHLH.AYSNNVEDV..DLEETHWTDELKT
Retrocopy TLLWGDLIHLHKAYSNNVEDVEFDLEETHWTDELKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1960 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1960 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013840	1 retrocopy	retro_meug_1960 ,