>retro_meug_2017
GTTTTAGCAAATCAGTCAGATTACATAAATGATTTGGTGTTTGCCCCCAAAGAAGTCCAAGAAATTGCAAGTCTGAGTGA
TGATCATACATGCAAGCTCTGGGACTTAGAAAGGAATCAGGAAGCTCATTTTGTTCTCCATTCCTCTGGAAAGAGTGCCT
GCTGGCATCCTGAGCAAGTATGGAAACTGATGGTTGCAGAGAAGAACAGAACAATCAGGTTCTATGATCTCATTACCCAG
CAGGCTCTCCTGTCTCCTGAATCTGAACAGATGCCATTAAGGTCAGCACATAGGTATTTACGAAACACCAGTTTAAGTTG
GAGCTGTTGCAGGAAATGATTGGTTAATCTGGAATATTACTCGGTCTACTTAACCATAAGATAAGAGATCTGTCCATATG
GATTGAGCCCATTTATTCAGGTGGTCAACAGTTAATGAAAACCTGCTTGCCACCACCAGCTACCCTGGCAAAAAAAGACC
ACTCAACTAATTCATCATTTG
ORF - retro_meug_2017 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.33 % |
Parental protein coverage: |
51.23 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | VLAGHSDYINDLVFAPKEGQEIASVSDDHTCRVWDLEGNQKAHFVLRSAGMSVCWHPEESCKLMVAEKNG |
| VLA..SDYINDLVFAPKE.QEIAS.SDDHTC..WDLE.NQ.AHFVL.S.G.S.CWHPE...KLMVAEKN. |
Retrocopy | VLANQSDYINDLVFAPKEVQEIASLSDDHTCKLWDLERNQEAHFVLHSSGKSACWHPEQVWKLMVAEKNR |
|
Parental | TIRFYDLITQQAILSLESEQTPLMSAHWCFRNTFK-VGAVAGNDWLIWDITRSSYPQDKRPVHMERAHLF |
| TIRFYDLITQQA.LS.ESEQ.PL.SAH...RNT...VGAVAGNDWLIW.ITRS..P.DKR.VHM..AHLF |
Retrocopy | TIRFYDLITQQALLSPESEQMPLRSAHRYLRNTSL>VGAVAGNDWLIWNITRST*P*DKRSVHMD*AHLF |
|
Parental | RWSTVNENLFATTGYPGK-MTTQLLIHHL |
| RWSTVNENL.ATT.YPGK...T..LIHHL |
Retrocopy | RWSTVNENLLATTSYPGK<KKTTQLIHHL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2017 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2017 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.