RetrogeneDB ID: | retro_meug_2160 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold96797:3886..4277(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB2B | ||
Ensembl ID: | ENSMEUG00000010489 | ||
Aliases: | None | ||
Description: | RAB2B, member RAS oncogene family [Source:HGNC Symbol;Acc:20246] |
Percent Identity: | 68.12 % |
Parental protein coverage: | 62.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR-R |
LLQFTD.RFQ..HDLTIGVEFGA.M..ID.KQIKLQIWDTAGQESF.SITRS..RG.A..LLV.DITR.R | |
Retrocopy | LLQFTD*RFQSGHDLTIGVEFGASMA-IDRKQIKLQIWDTAGQESFSSITRSCHRGIAVSLLVFDITR<R |
Parental | ETFNHLTSWLEDARQHSSSNMVIMLIG-NKSDLESRRDVKREEGEAFAREHGLIFMETSAKTASNVEE |
.TF.HL..WLE.A.Q...SN..I.....NK.DLESRR.VK...GE..AREHG..FM.TS..T.SNVEE | |
Retrocopy | DTFSHLITWLENAYQN--SNSKIIVMR<NKTDLESRREVKK--GELVAREHGFFFMTTSLRTPSNVEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000044207 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005641 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000710 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000026575 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010489 | 2 retrocopies |
retro_meug_2160 , retro_meug_91,
|
Macropus eugenii | ENSMEUG00000016598 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001902 | 3 retrocopies | |
Sorex araneus | ENSSARG00000004969 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001886 | 1 retrocopy |