RetrogeneDB ID: | retro_meug_2179 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold98650:467..1500(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC1A | ||
Ensembl ID: | ENSMEUG00000005609 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703] |
Percent Identity: | 79.77 % |
Parental protein coverage: | 99.14 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | IALSPNNHEVHIYKKNGNQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGIWKPTLVI |
IA.SPNNH.VHIYK.N.NQWV.AHELKE.NGHITGIDWAPKSD.IVTCGA..NAYV.SQKDGIWKPTLVI | |
Retrocopy | IAFSPNNHQVHIYK-N*NQWVTAHELKENNGHITGIDWAPKSD*IVTCGAPHNAYV*SQKDGIWKPTLVI |
Parental | LRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSC |
LRI.RAATFVKWS.LENKFAVGSG..L...CYFESE.DWWVSKHIKKPIRSTVLSL.WHPNNVLLAAGSC | |
Retrocopy | LRITRAATFVKWSLLENKFAVGSGVPLNFICYFESESDWWVSKHIKKPIRSTVLSLNWHPNNVLLAAGSC |
Parental | DFKCRVFSAYIKEVDEKPASTPWGTKMPFGQLMSEFGGTGSGGWVHGVSFSASGNRLAWVSHDSTVSVAD |
.FKCRVFS.YIKEVDEKP..TP.GTK.PFGQL.SEF..T..GGWVHGVSFSASGN.L.WVSHDSTVSV.D | |
Retrocopy | NFKCRVFSVYIKEVDEKPVNTP*GTKIPFGQLLSEFDCTRNGGWVHGVSFSASGNCLTWVSHDSTVSVVD |
Parental | ASKNMXXXXXXXXXXXXXXVSFVSENSVVAAGHDCCPMLFNYDDRGSLTFVSKLDIP-KQSIQRNISAME |
ASK.M..............V.FVSENS.V.AGHDC.PMLFNY.D.GSL.FVSKLDIP.KQSIQ.NISAM. | |
Retrocopy | ASKHMMVS*LKTEFLPFLSVLFVSENSMVTAGHDCLPMLFNYGDCGSLSFVSKLDIP>KQSIQWNISAMK |
Parental | RFRNMDKRATTEDRNTALDTLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGL |
.F.NMD.R..TED.NTALD.LHQNSIT..SIYEVDKQDC.KFCTTGIDGAMT.WDFKTLES.IQGL | |
Retrocopy | CFHNMDNRFMTEDYNTALDKLHQNSITRISIYEVDKQDCHKFCTTGIDGAMTVWDFKTLESLIQGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |