RetrogeneDB ID: retro_meug_233

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_7019:12789..13335(-)
• Located in intron of: ENSMEUG00000009367

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WDR45B
• Ensembl ID: ENSMEUG00000013344
• Aliases: None
• Description: WD repeat domain 45B [Source:HGNC Symbol;Acc:25072]

Sequence

>retro_meug_233
ATTGTGGTGGTTTTGGACTCCATGATTAAGGTTTTTACTTTCACACACAATCTCCATCAGTTGCACATGTTTGAGACCTG
CTACAACCCTAAGGGTCTATGTGTTTTACGTCCAAGTAGCAACAATTGTCTCCTGGCATTCCCTGGTACACATACTGGCC
ATGTGCAGATAGTGGATCTGGCCAACACAGAAAAACCTTCAGTTGATATCCCAGCTCATGAAGGAGTCCTAAGCTGTATA
GTTTTAAACCTCCAGGGAACAAGAAATGCAACAGTGTCTGAAAAAGGGACCCTTATAAGAATATTTGATATTTCATCAGG
GCATTTAATCCAGGAACTGAGAAGAGAATCTCAAGCAGCAAATTTTTATTGTATTAATTTCAATTAGGATGCTTCACTCA
TCCGTATATCAAGTGATCATGGAACAGTGCACATTTTTGCAGCTGAAGATCCCAAAAGGAATAAGCAGTCTAGGTTCCCT
CAGGCTCTCCATGCATTTGTGCCTTCAGTACCGAGCCAAATGCTGTCACAGCAATCTGTGCAGATG

Alignment

ORF - retro_meug_233 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.32 %
• Parental protein coverage: 58.25 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVDI
          IVVVLDSMIKVFTFTHN.HQLH.FETCYNPKGLCVL.P.SNN.LLAFPGTHTGHVQIVDLANTEKP.VDI
Retrocopy IVVVLDSMIKVFTFTHNLHQLHMFETCYNPKGLCVLRPSSNNCLLAFPGTHTGHVQIVDLANTEKPSVDI

Parental  PAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH
          PAHEGVLSCI.LNLQGTR.AT.SEKGTLIRIFD.SSGHLIQELRR.SQAAN.YCINFN.DASLI..SSDH
Retrocopy PAHEGVLSCIVLNLQGTRNATVSEKGTLIRIFDISSGHLIQELRRESQAANFYCINFN*DASLIRISSDH

Parental  GTVHIFAAEDPKRNKQSSLASA--SFLPKYFSSKWSFSKFQV
          GTVHIFAAEDPKRNKQS....A...F.P...S...S....Q.
Retrocopy GTVHIFAAEDPKRNKQSRFPQALHAFVPSVPSQMLSQQSVQM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_233 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_233 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000005657	1 retrocopy	retro_cpor_322,
Homo sapiens	ENSG00000141580	2 retrocopies	retro_hsap_1820, retro_hsap_1879,
Gorilla gorilla	ENSGGOG00000006132	2 retrocopies	retro_ggor_1376, retro_ggor_2173,
Macropus eugenii	ENSMEUG00000013344	1 retrocopy	retro_meug_233 ,
Macaca mulatta	ENSMMUG00000021803	1 retrocopy	retro_mmul_1330,
Mus musculus	ENSMUSG00000025173	1 retrocopy	retro_mmus_1487,
Nomascus leucogenys	ENSNLEG00000010516	1 retrocopy	retro_nleu_1227,
Pongo abelii	ENSPPYG00000008785	2 retrocopies	retro_pabe_150, retro_pabe_1559,
Pan troglodytes	ENSPTRG00000009807	3 retrocopies	retro_ptro_1171, retro_ptro_1262, retro_ptro_2912,
Pteropus vampyrus	ENSPVAG00000006212	1 retrocopy	retro_pvam_158,