RetrogeneDB ID: | retro_meug_249 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_7724:14591..15257(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000011435 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPDL | ||
Ensembl ID: | ENSMEUG00000011454 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037] |
Percent Identity: | 87.84 % |
Parental protein coverage: | 90.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PRHLPPARSPAAMEDVNEYSNMEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDC |
PRHLPPA.S.AAMED.NEYSNME.F.EGSKINASKNQQDDGKMFIG.L.WD.SKKDLTEYLSRFG.VVDC | |
Retrocopy | PRHLPPAHSYAAMEDKNEYSNMEAFGEGSKINASKNQQDDGKMFIGELRWDASKKDLTEYLSRFGKVVDC |
Parental | TIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEE |
TIK.DPVTGRS.GF.FVL.KDAASVDKVLELKE.KLDGKL.DPKRAKALKGKEPP.K.FV..LSPDTSEE | |
Retrocopy | TIKMDPVTGRSWGFSFVLLKDAASVDKVLELKEYKLDGKLTDPKRAKALKGKEPPRKGFVARLSPDTSEE |
Parental | Q--IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLENRYHQIGSGKCEIKVAQPKEVYR |
Q..IKEYFGAFGEIEN.ELPMDTKTNERR.FCF.TYTDEEPVKKLLEN.YHQIGSGKCEIKVAQP.EVYR | |
Retrocopy | QIKIKEYFGAFGEIENVELPMDTKTNERRVFCFMTYTDEEPVKKLLENSYHQIGSGKCEIKVAQPEEVYR |
Parental | QQQQQQKGGRGA |
QQQQQQKGGR.A | |
Retrocopy | QQQQQQKGGRSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015197 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003887 | 7 retrocopies | |
Felis catus | ENSFCAG00000000455 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001084 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007909 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000011454 | 7 retrocopies |
retro_meug_1252, retro_meug_1378, retro_meug_1491, retro_meug_1971, retro_meug_2165, retro_meug_249 , retro_meug_766,
|
Macropus eugenii | ENSMEUG00000013622 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000011916 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013979 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001793 | 2 retrocopies |