RetrogeneDB ID: retro_meug_327

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold10188:9250..10102(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MCU
• Ensembl ID: ENSMEUG00000001448
• Aliases: None
• Description: mitochondrial calcium uniporter [Source:HGNC Symbol;Acc:23526]

Sequence

>retro_meug_327
AGTGTACCGGTGCCATCTGATGAGGTAGTCATTAATTACAGATACGGTCTTCCTTTGATAACTCTCACTTTGCCATCAAG
ACAGGAGCGCTGTCGTTTCACAGTCAAACCCATGTTAACCACGGTTGGTTCATTTCTCCAGGACATCCAGAATGAGGACC
GAGGTATTAAAACTACAGCTGTCTTCACCACAGATGGGAGCAGAATTCCATCTTCAATCTCAATGGAGATTTTGCTTACG
AATGATTTTAAACTCATGATAAATGACATGACATATGATGTTCATTGTCCTAGGAAAGAAAAACTGAGCAGCGAGCACAT
GACCAACATGGACGACATCAAGTCCTTGGTACAGAGACTCTTTACTGCTTTGCATGTGGAGGAGCATCAGGTCAAGAAGG
AACGCAGTTTACTGGAGAAAATTGAGGAGCTGAAGGAGCAGCTCCAGCCCCTGGAGGAGCTGAAAGCTAAAATTGAAGCT
GGCTCAGAGGCCAAAACCAACAGACTCTTGTGGACCGGCTTGGCCTTGATGTCCACTCAGGGTGGAATCTTGGCATGGCT
CACGTGGTGGGTGTACTCCTGGGACATCATGGAACCCGTCACCTACTTCATCACTTTTGGTAGCTCCATGACCTTCTTCG
CTTATTTCCTCCTCACTCGACAGGATTCTTCTTACTCACTCATTAAGAATCGACAATTCCTCTATTTCTTCCACAAAAGA
CTGAAGAAGAATGATTTTGATGTGCAACAGTATAACAAGTTAAAAGAAGATCTTGAAGAGGCTGAAGAGTCTCTGCAACG
TCTGCGCCAGCCTCTCCACTTGAGGTTACCAATCCAGGAAATCAAAGAGAAG

Alignment

ORF - retro_meug_327 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.46 %
• Parental protein coverage: 81.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  STVVPSDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVA
          S..VPSD.V...Y..GLP.I...LPSR.ERC.FT.KP....VG.FL...Q.EDRGI...A....DG.R..
Retrocopy SVPVPSDEVVINYRYGLPLITLTLPSRQERCRFTVKPMLTTVGSFLQDIQNEDRGIKTTAVFTTDGSRIP

Parental  SSTGIDLLLLDDFKLVINDATYHVRPPKRNLLGHENAATLNDVKTLVQQLYTTLCIEQHQLSKEKELVER
          SS.....LL..DFKL.IND.TY.V..P....L..E......D.K.LVQ.L.T.L..E.HQ..KE..L.E.
Retrocopy SSISMEILLTNDFKLMINDMTYDVHCPRKEKLSSEHMTNMDDIKSLVQRLFTALHVEEHQVKKERSLLEK

Parental  LEELKEQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAM
          .EELKEQL.PLE.....I....E..T...LW.GLA.M.TQ.GILA.LTWW.YSWDIMEPVTYFIT.GS.M
Retrocopy IEELKEQLQPLEELKAKIEAGSEAKTNRLLWTGLALMSTQGGILAWLTWWVYSWDIMEPVTYFITFGSSM

Parental  ATYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKTRFDLEKYNRLKDAIAQAELDLKRLRDPLQIHLPIRQ
          ...AYF..TRQ...Y.....RQ.L.FFHK..KK..FD...YN.LK.....AE..L.RLR.PL...LPI..
Retrocopy TFFAYFLLTRQDSSYSLIKNRQFLYFFHKRLKKNDFDVQQYNKLKEDLEEAEESLQRLRQPLHLRLPIQE

Parental  IGDK
          I..K
Retrocopy IKEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_327 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_327 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003454	1 retrocopy	retro_chof_1624,
Macropus eugenii	ENSMEUG00000001448	1 retrocopy	retro_meug_327 ,