RetrogeneDB ID: | retro_meug_375 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold107138:1893..2681(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PEF1 | ||
Ensembl ID: | ENSMEUG00000014458 | ||
Aliases: | None | ||
Description: | penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:30009] |
Percent Identity: | 79.92 % |
Parental protein coverage: | 92.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PGSYYSGHPQYGGGLP-PGGGYGGPAPGGPYRPPSGGGAYGHPSPGGHPSSAPGGPYGGSAPGGPYGQPA |
P.SYY.GH.QY.GGLP.PGG.YG.PA.GG.YRPPS...AYGHPSPGG.PSSAPGG.YG.SA.GGP.GQPA | |
Retrocopy | PSSYYPGHSQYEGGLP<PGGSYGSPALGGSYRPPSAAEAYGHPSPGGIPSSAPGGLYGCSALGGPNGQPA |
Parental | TNPYNTPQAGPYGQ----GSIPPGVDPEAYSWFQTVDSDHSGYISVKELKQALVNSNWSAFNDETCLMMI |
TNPYN.PQ.GP.GQ....GSIPPGVDP.AYSWFQTVDSDH.GYIS.KELKQ.LVN.NWSAFND.TCLMMI | |
Retrocopy | TNPYNIPQGGPFGQSPSAGSIPPGVDPKAYSWFQTVDSDHNGYISAKELKQVLVNFNWSAFNDKTCLMMI |
Parental | NMFDKTKTGRIDLFGFSALWTFIQQWKNLFQQYDRDHSGSISYNELQQALSQMGYNLSPQFTQLLLSRYC |
NMFDKTKTG.I..FG.SALWTFI.QWKN.FQQYD.DHSG.ISYN.LQQALSQMGYNLSPQFTQLLLSR.C | |
Retrocopy | NMFDKTKTGQINFFGISALWTFIKQWKNFFQQYDWDHSGCISYNKLQQALSQMGYNLSPQFTQLLLSRLC |
Parental | PRSANPAMQLDRFIQVCTQLQVLTEAFREKDTSMQGSVRLSFEEFLIMTASRML |
P.S.NPAMQLD.FIQVCTQLQV.TEAFREKDTSM..S..LSFEE.LI...S.ML | |
Retrocopy | PHSVNPAMQLDHFIQVCTQLQVQTEAFREKDTSMHSSFWLSFEEVLIIITSQML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006355 | 1 retrocopy | |
Homo sapiens | ENSG00000162517 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015897 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014458 | 1 retrocopy |
retro_meug_375 ,
|
Microcebus murinus | ENSMICG00000001374 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023397 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017573 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001979 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005744 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001611 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000463 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013972 | 2 retrocopies |