RetrogeneDB ID: retro_meug_442

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold11503:4711..5194(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MOGAT2
• Ensembl ID: ENSMEUG00000001166
• Aliases: None
• Description: monoacylglycerol O-acyltransferase 2 [Source:HGNC Symbol;Acc:23248]

Sequence

>retro_meug_442
AAGGAGAAAGGTGGAAATTTGCTGCAGATCATTGTGGGAGGATCCCTGGAAGCCCTGGATGCTCGGCCTGGAAGCTACAC
ACTACCACTGAAGAAACGGAAAGGATTTGTCAGACTTGCTTTGCTTCATGGGGCAGCTCTGGTACCGATCTTCTCCTTTG
GAAAGAATGAACTCTTCGACCAAGTTGACAATCCCCAGGGGTTCTGGCTGCACTGGATTCAGGTAAGACTGCAAAAGGTC
ATGGGCATCTCTCTCTCAGTCTTCCATGGCTGAGGGATCTTCCAGTACAACCTTGGCCTGCTCCCTTACCAGCAGCAAAT
CACTACTGTGGTGGGGAAACCCATCAAAGTAGAGCAAAATACCAACCATTCCCCGGAGGAAGTGGACTCTCTGCACCAGC
GTTACATGACAGAACTATGCAACCTATTTGAAGCCCACAAGACCAAATACAACATTCCTCCAGACCAGCACCTGGAGTTC
CAA

Alignment

ORF - retro_meug_442 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.09 %
• Parental protein coverage: 53.14 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKKGGNLLVVIVGGSQEALDARPGSYTLLLRKRKGFVRLALLHGAPLLPIFSFGENEVFNQIDNPQGSWL
          K.KGGNLL..IVGGS.EALDARPGSYTL.L.KRKGFVRLALLHGA.L.PIFSFG.NE.F.Q.DNPQG.WL
Retrocopy KEKGGNLLQIIVGGSLEALDARPGSYTLPLKKRKGFVRLALLHGAALVPIFSFGKNELFDQVDNPQGFWL

Parental  RWIQERLQKVMGISLPLFHGRGIFQYNFGLLPYRQQITTVVGKPIKVEQNTNPSQEEVDSLHQRYMTELC
          .WIQ.RLQKVMGISL..FHG.GIFQYN.GLLPY.QQITTVVGKPIKVEQNTN.S.EEVDSLHQRYMTELC
Retrocopy HWIQVRLQKVMGISLSVFHG*GIFQYNLGLLPYQQQITTVVGKPIKVEQNTNHSPEEVDSLHQRYMTELC

Parental  NLFEAHKTKYNVPPDQHLEFR
          NLFEAHKTKYN.PPDQHLEF.
Retrocopy NLFEAHKTKYNIPPDQHLEFQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_442 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_442 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001166	1 retrocopy	retro_meug_442 ,
Monodelphis domestica	ENSMODG00000006756	3 retrocopies	retro_mdom_126, retro_mdom_1269, retro_mdom_712,
Sarcophilus harrisii	ENSSHAG00000001147	1 retrocopy	retro_shar_583,