RetrogeneDB ID: retro_meug_455

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold116980:3585..4134(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRMT8
• Ensembl ID: ENSMEUG00000004075
• Aliases: None
• Description: protein arginine methyltransferase 8 [Source:HGNC Symbol;Acc:5188]

Sequence

>retro_meug_455
GAAATGCTCAAGGACAAAGTGCAGACACTCACTTACTGCCATTTCATGTTACATAACCAGCAGTTGTTCAAGAACAAGGT
GGTGCTGGATATTGGCTCTGGCACAGGCATCCTCTGCATGTTTGTGGCCAAGGCTGGGATCTGGAAGGTCATTGGGATTG
AGTGCTCTAGCATCTCTGACTATGCCATCAAGACTGTCAGGGCCAACACACTTGACCGTGTGGTGACCATTATCAAAGGG
AAGGTGGAGGAAGTGGAGCTGCCCATGGATAAAGTGGACATGATTATCAGTGAGTGGATGGGTTACTGCCTCTTCTATGA
ATCCATGCTCAACACTGTTCTACACGCTCAAGTCAAGTGGTTGGCCCCCGATTGGCTCATTTTTTTTGACTGGGCAGCAC
TGTATGTGACCACCATAGAGGACCGGCAGTACAAAGATTACAAGATTCATTGGTGAGAGAACGTCCACAGCTTTGACATG
TCCTGTATCAAGGACATGTCCATCAAGGAGCCTTGCATGAACATGGTTGACCCCAGGCAGTTGGTGACC

Alignment

ORF - retro_meug_455 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.76 %
• Parental protein coverage: 59.61 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVYGIECSSISDYSEKIIKANH
          EMLKD.V.TLTY...M.HN...FK.KVVLD.GSGTGIL.MF.AKAG..KV.GIECSSISDY..K...AN.
Retrocopy EMLKDKVQTLTYCHFMLHNQQLFKNKVVLDIGSGTGILCMFVAKAGIWKVIGIECSSISDYAIKTVRANT

Parental  LDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYMVAIE
          LD...TI.KGKVEEVELP..KVD.IISEWMGYCLFYESMLNTV..A..KWL.P..L...D.AALY...IE
Retrocopy LDRVVTIIKGKVEEVELPMDKVDMIISEWMGYCLFYESMLNTVLHAQVKWLAPDWLXXXDWAALYVTTIE

Parental  DRQYKDFKIHWWENVYGFDMTCIRDVAMREPLVDIVDPKQVVT
          DRQYKD.KIHW.ENV..FDM.CI.D....EP....VDP.Q.VT
Retrocopy DRQYKDYKIHW*ENVHSFDMSCIKDMSIKEPCMNMVDPRQLVT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_455 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_455 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004075	1 retrocopy	retro_meug_455 ,
Nomascus leucogenys	ENSNLEG00000002986	1 retrocopy	retro_nleu_2941,
Pongo abelii	ENSPPYG00000004159	1 retrocopy	retro_pabe_2804,
Pan troglodytes	ENSPTRG00000004543	1 retrocopy	retro_ptro_2313,
Tupaia belangeri	ENSTBEG00000000940	1 retrocopy	retro_tbel_750,