RetrogeneDB ID:

retro_meug_519

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold128725:8675..8958(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CENPV
Ensembl ID:ENSMEUG00000002027
Aliases:None
Description:centromere protein V [Source:HGNC Symbol;Acc:29920]


Retrocopy-Parental alignment summary:






>retro_meug_519
AAATTCCAAGATCTGGTGAAACACACTGGAAGCTGCCACTGTGTGGTGGTTCATTTTGGTGTCTGAGCTGTGGTTGATCT
GCAGTTTTTTGACTACAACTGTAGCATCTGCAAAAAGAAACAGAACTGACACTTCATTGTTCCAGCCCATTGCTTCAAGC
TTCTGAAGGGTGCTGAGAAAATAACTACTTACACCTTCAACACTCATAAGGCCCAGCACACATTCAGCCAAGAGCTGCGG
GGTACAGAGTTTCTATACATCTCTGTCCAACCCTGATGGTTAT

ORF - retro_meug_519 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.79 %
Parental protein coverage: 51.65 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEYQGLVKHTGGCHCGAVRFEVWASADLHVFDCNCTICKKKQNRHFIVPASRFKLLKGAENITTYTFNTHK
..Q.LVKHTG.CHC..V.F.V.A..DL..FD.NC.ICKKKQN.HFIVPA..FKLLKGAE.ITTYTFNTHK
RetrocopyKFQDLVKHTGSCHCVVVHFGV*AVVDLQFFDYNCSICKKKQN*HFIVPAHCFKLLKGAEKITTYTFNTHK
ParentalAQHTF-CKSCGVQSFYTPRSNPDGY
AQHTF..KSCGVQSFYT..SNPDGY
RetrocopyAQHTF>AKSCGVQSFYTSLSNPDGY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_519 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_519 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000047165 retrocopies
Canis familiaris ENSCAFG000000180192 retrocopies
Homo sapiens ENSG000001665823 retrocopies
Macropus eugenii ENSMEUG00000002027 1 retrocopy
retro_meug_519 ,
Microcebus murinus ENSMICG000000071661 retrocopy
Mustela putorius furoENSMPUG000000101462 retrocopies
Nomascus leucogenys ENSNLEG000000147261 retrocopy
Otolemur garnettii ENSOGAG000000293651 retrocopy
Pan troglodytes ENSPTRG000000088101 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000122212 retrocopies



Copyright © RetrogeneDB 2014-2017