RetrogeneDB ID: retro_meug_998

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold2537:8795..9578(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IMPDH2
• Ensembl ID: ENSMEUG00000007895
• Aliases: None
• Description: IMP (inosine 5'-monophosphate) dehydrogenase 2 [Source:HGNC Symbol;Acc:6053]

Sequence

>retro_meug_998
ACCCATGAGGATGACAGGTATTGACTTGACTTGCTGGCTCAAGCTGGTGTCAATATAGTCATCTGGACTCTTCCCAAGGA
AACTCCATTTCCCAAATTAACATGATCAGTTACATCAAGAAGAAATATAACAACTTCCATGTTATCAGTGGCAATGTGGA
GATAGCTGCACAGGCAAAAATCCTCACTGATACTGGACTGGATGCCCTAAGTGTTGGCATGGGTAGTAGCTCCATCTGCA
TCACACAAGAAGTGCTGGCATGCGGGCGGCCTCAGGTGACAGCTGCATACAAGGTCTCAGAATATGCATGGCACTTTAGT
GTCCCTGTCATTGCAGATGGCGCCATCCAAAACGTAGGTCACATCACCAGAGCCCTTGCCCTTGGAGCTTCCACAGTGAT
GATGGGCTCTCTGTTGGCAGCAACCACGGAGGCCCCAGGCAAGTATTTTTCTGATGGGATCTGGCTAAAGAAATACGAGG
GCATGGGCTCCCTCAATGCCACGGACAAGAACCTTGGCATCCAGAACCATTACTTCATTGAAGCAGACAAAATCAAAATG
GCTCAAGGGGTGTCTGGGGCATGCAGGACAAGAGTCCATCCTCAAACTTGTTCCCTATTTTATTGTTGACATCCAGCACT
CCTGTCAAACTACTGGTACCAAGAGTGTAACTCAAGTTATAGCCTTGATGTACTCAGGGGGCTGAAATTTGAGAAAAGAA
CTGTCATATTCTCAGGTGAAAGGAGGTGTCCATGGATTCCATTCACATGAGAAGTGACTCTTC

Alignment

ORF - retro_meug_998 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.49 %
• Parental protein coverage: 50.97 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  THEDDKYRLDLLAQAGVDVVV-LDSSQGNSIFQINMIKYIKEKYSNLQVIGGNVVTAAQAKNLIDAGVDA
          THEDD.Y.LDLLAQAGV..V..LDSSQGNSI.QINMI.YIK.KY.N..VI.GNV..AAQAK.L.D.G.DA
Retrocopy THEDDRY*LDLLAQAGVNIVI<LDSSQGNSISQINMISYIKKKYNNFHVISGNVEIAAQAKILTDTGLDA

Parental  LRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLL
          L.VGMGS.SICITQEVLACGRPQ.TA.YKVSEYA..F.VPVIADG.IQNVGHI..ALALGASTVMMGSLL
Retrocopy LSVGMGSSSICITQEVLACGRPQVTAAYKVSEYAWHFSVPVIADGAIQNVGHITRALALGASTVMMGSLL

Parental  AATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKNLGSQNRYFSEADKIKVAQGVSGA-VQDKG-SIHKFVP
          AATTEAPG.Y.FSDGI.LKKY.GMGSL.A.DKNLG.QN.YF.EADKIK.AQGVSGA..QDK..SI.K.VP
Retrocopy AATTEAPGKY-FSDGIWLKKYEGMGSLNATDKNLGIQNHYFIEADKIKMAQGVSGA<MQDKS<SILKLVP

Parental  YLIAGIQHSCQDIGAKSLTQVRAMMYSG-ELKFEKRT-SSAQVEGGVHGLHSYEKRLF
          Y.I..IQHSCQ..G.KS.TQV.A.MYSG..LKFEKRT.S..QV.GGVHG.HS.EK.LF
Retrocopy YFIVDIQHSCQTTGTKSVTQVIALMYSG<GLKFEKRT>SYSQVKGGVHGFHSHEK*LF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_998 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_998 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007895	3 retrocopies	retro_meug_1474, retro_meug_858, retro_meug_998 ,
Macropus eugenii	ENSMEUG00000016082	2 retrocopies	retro_meug_2095, retro_meug_542,