RetrogeneDB ID: retro_mluc_105

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429806:1483446..1484247(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025611
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000026681
• Aliases: None
• Description: None

Sequence

>retro_mluc_105
ATGAAGGACCGGCTGGAGCAGCTGAAGGCCAAGCAGCTGACACAGGATGATGATGCCGATGAAGTCGAGATTGCCGTTGA
CAACACAGCCTTCATGGATGAGTTCTTCTCTGAGATCGAGGAAACTCGGCTCAACATTGACAAGATCTCTGAGCATGTAG
AGGGGGCTAAGAAACTCTACAGTATCATTCTGTCTGCACCAATTCCAGAACCAAAAACCAAGGATGACCTAGAGCAGCTC
ACGACTGAAATCAAGAAAAGGGCCAACAACGTCCGGAACAAACTGAAGAGCATGGAGAGGCACATTGAAGAAGACGAGGT
CCGCTCGTCTGCAGACCTTCGTATTCGAAAATCCCAGCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACCAAAT
ACAATGAGGCTCAAGTGGACTTTCGTGAACGCAGCAAAGGGCGAATCCAGCGGCAGCTCGAAATCACCGGCAAGAAGACC
ACAGATGAGGAGCTGGAGGAGATGTTGGAGAGTGGAAACCCTGCCATCTTCACTTCTGGGATCATTGACTCTCAGATTTT
CAAGCAAGCCCTCAGTGAGATCGAGGGACGGCACAAAGACATCGTGAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACA
TGTTTATGGACATCGCCATGCTGGTGGAGAATCAGGGCGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTG
GATCACGTGGAGAAGGCACGGGATGAAACTAAAAAAGCCGTGAAATACCAGGGGCAGGCCCGGAAGAGCCCGATTCTACT
C

Alignment

ORF - retro_mluc_105 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.49 %
• Parental protein coverage: 92.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKKKKRKKNKQLTQDDDADEVEIAVDNTAFMDEFFSEIEETRLNIDKISEHVEGAKKLYSIILSAPIPEP
          K......K.KQLTQDDDADEVEIAVDNTAFMDEFFSEIEETRLNIDKISEHVEGAKKLYSIILSAPIPEP
Retrocopy KDRLEQLKAKQLTQDDDADEVEIAVDNTAFMDEFFSEIEETRLNIDKISEHVEGAKKLYSIILSAPIPEP

Parental  KTKDDLEQLTTEIKKRANNVRNKLKSMERHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDF
          KTKDDLEQLTTEIKKRANNVRNKLKSMERHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDF
Retrocopy KTKDDLEQLTTEIKKRANNVRNKLKSMERHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDF

Parental  RERSKGRIQRQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQISKQALSEIEGRHKDIVRLESSIKEL
          RERSKGRIQRQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQI.KQALSEIEGRHKDIVRLESSIKEL
Retrocopy RERSKGRIQRQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQIFKQALSEIEGRHKDIVRLESSIKEL

Parental  HDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKKAVKYQGQARKKLIII
          HDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKKAVKYQGQARK..I..
Retrocopy HDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKKAVKYQGQARKSPILL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_105 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000026681	1 retrocopy	retro_mluc_105 ,
Oryctolagus cuniculus	ENSOCUG00000013382	1 retrocopy	retro_ocun_1616,
Ictidomys tridecemlineatus	ENSSTOG00000007206	1 retrocopy	retro_itri_1854,