RetrogeneDB ID: retro_mluc_1082

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429793:8008745..8009702(+)
• Located in intron of: ENSMLUG00000007526

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BTBD2
• Ensembl ID: ENSMLUG00000003213
• Aliases: None
• Description: None

Sequence

>retro_mluc_1082
CGGGAGGCCCACTGCGTGGAGTTCCTGCAGAAGAACCTCCGGGCGGATAACGCCTTCATGCTGCTGACGCAGGCCCGGCT
GTTTGACGAACCACAGCTTGCCAGCCTGTGCCTGGAGAACATCGACAAAAACACGGCTGACGCCATCGCCGCAGAGGGCT
TCACGGATATTGACCTGGACACACTGGTGGCCGTCCTGGAGCGGGACACGCTGGGCATCCGTGAGGTGCGCCTGTTCAGT
GCCGTTGTCCGCTGGTCTGAGGCCGAGTGTCAGCAGCTGCAGGTGACGCCTGAGAATAAGCGGAAGGTCCTGGGCAAGGC
ACTGGCCCTCATCCGCTTCCCACTGATGACCATCGAGGAGTTTGCCGAAGGGCCTGCACAGTCAGGCATCCTTGTGGACC
GCGAGGTGGTGAGCCTCTTCCTGCACTTGACCGTCAACCCCAAGCCCCGTGTGGACTTCATCGACCGGCCACGCTGCTGC
CTCCGTGGGAAGGAGTGTAGCATCAACCGCTTCCAGCAGGTGGAAAGCCGCTGGGGCTACAGTGGCACAAGTGACCGCAT
CAGGTTCTCGGTCAACAAGCGCATCTTTGTGGTTGGCTTTGGACTATATGGCTCCATCCATGGGCCCACAGATTATCAAG
TGAACATCCAGATCATCCACACAGACAGCAACACGGTGCTGGGCCAGAATGACCCGGGCTTCAGCTGCGACGGCTCCGCC
AGCACTTTCCGAGTCATGTTCAAGGAGCCGGTGGAGGTGCTGCCCAACGTCAACTACACAGCCTGTGCCACGCTCAAGGG
CCCGGACTCCCACTACGGCACCAAAGGCCTGCGCAAGGTGACCCACAAGTCGCCAACAACGGGGGCCAAGACATGCTTCA
CCTTCTGCTACGCGGCCGGGAACAACAACGGCACATCCGTGGAGGACGGCCAGATCCCAGAGGTGATCTTCTACACC

Alignment

ORF - retro_mluc_1082 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.33 %
• Parental protein coverage: 83.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RQKYAVPAPKKNLRADNAFMLLTQARLFDEPQLASLCLENIDKNTADAITAEGFTDIDLDTLVAVLERDT
          R....V....KNLRADNAFMLLTQARLFDEPQLASLCLENIDKNTADAI.AEGFTDIDLDTLVAVLERDT
Retrocopy REAHCVEFLQKNLRADNAFMLLTQARLFDEPQLASLCLENIDKNTADAIAAEGFTDIDLDTLVAVLERDT

Parental  LGIREVRLFSAVVRWSEAECQRQQLQVTPENKRKVLGKALALIRFPLMTIEEFAAGPAQSGILVDREVVS
          LGIREVRLFSAVVRWSEAECQ..QLQVTPENKRKVLGKALALIRFPLMTIEEFA.GPAQSGILVDREVVS
Retrocopy LGIREVRLFSAVVRWSEAECQ--QLQVTPENKRKVLGKALALIRFPLMTIEEFAEGPAQSGILVDREVVS

Parental  LFLHFTVNPKPRVDFIDRPRCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHG
          LFLH.TVNPKPRVDFIDRPRCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHG
Retrocopy LFLHLTVNPKPRVDFIDRPRCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHG

Parental  PTDYQVNIQIIHTDSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLPNVNYTACATLKGPDSHYGTKGLR
          PTDYQVNIQIIHTDSNTVLGQND.GFSCDGSASTFRVMFKEPVEVLPNVNYTACATLKGPDSHYGTKGLR
Retrocopy PTDYQVNIQIIHTDSNTVLGQNDPGFSCDGSASTFRVMFKEPVEVLPNVNYTACATLKGPDSHYGTKGLR

Parental  KVTHESPTTGAKTCFTFCYAAGNNNGTSVEDGQIPEVIFYT
          KVTH.SPTTGAKTCFTFCYAAGNNNGTSVEDGQIPEVIFYT
Retrocopy KVTHKSPTTGAKTCFTFCYAAGNNNGTSVEDGQIPEVIFYT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1082 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000003213	1 retrocopy	retro_mluc_1082 ,