RetrogeneDB ID: retro_mluc_1091

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429794:6667874..6668782(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1091
AGTCAGAAGGAATTTGTGCGACAGTACTGCCAGCACCGTGAAGAAGAGCCCCGGCTACCCATGCTGACCTCTGCCTGCCC
GGCTGGGACCGATATACAGAGCGTGTGTGCTGGGTCACCCCATCACCCCCCACCTCTGCGTGGCCAAGTCTCCCCAGCAG
ATCATAGGCTCTCTGGTGAAGGATTACTTCACCAGACGGCAGAACCTGTCCCCAGACAAGATTTTCCATGTCATTGTGGC
CCCGTGTTATGACAAGCAACTAGAGGCCCTTTGAGAAGATGCTCCCACAGCTTTACATAGTTCCCAGGGTGCTGACTGCG
TGTTAACCTCAGGTGAAATTGTCCAGATAATGGAGCAAAGTGACCTCGCCTCGAATGATGCCGCCGTGGACACTCTGTTT
TGAGACATGAAGGAGAAGGAGGTGAGGCTCCTCGACGGTGCCAGCTCCGACAGGTACCTGGCGCACATCTTCAGACACAG
GGCCAAGGAGCTGTTCAACAAGGACGTGGGAGTGCTCACCTACCATACCCTGAGGAACAAAGACCTCCAGGAGGTCACCC
TTGAAAGGGACGGAGAGGTTCTGCTACGCTTTGAGGCTGCTTACAGCTTTCAGAACATCCAGAAGTGGTCCTGAAGCTGC
AGAGGGGCAAGTTCCCCTGCCACTTCGTGGAGGTCCTGGCCTGCGCCGGGCATGCCTAAGCGGCAGGGGCCAGGCCCAGG
CAGATGATGGGTATGCAGACAGGGCACTGCTGCAGCGGATGGAAGGCATCTACGATGCCATCCCAGTGTGGCCCCCGGAG
ACCAGCGCCCATGTGCAGGAGCTGTACCAGGAGTGGCTGGGGCGGGGGGACTCCCCCCAGGCCCAGGCAGCCCTGCACAC
CGCCTAGCAGGGCCCAGGGCAGCCTGCC

Alignment

ORF - retro_mluc_1091 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.26 %
• Parental protein coverage: 66.59 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SQKEFVRRYRQHREEEPRLPMLTSACPGWVR-YAERVLGHPITPHLCTAKSPQQIMGSLVKDYFARRQNL
          SQKEFVR.Y.QHREEEPRLPMLTSACP.....Y...VLGHPITPHLC.AKSPQQI.GSLVKDYF.RRQNL
Retrocopy SQKEFVRQYCQHREEEPRLPMLTSACPAGTD>YRACVLGHPITPHLCVAKSPQQIIGSLVKDYFTRRQNL

Parental  SPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTLLTRFGDV
          SPDKIFHVIVAPCYDK.LEAL.ED.PTALHSS.GADCVLTSGEIVQ.MEQSDL...DA.VDTL...F.D.
Retrocopy SPDKIFHVIVAPCYDKQLEAL*EDAPTALHSSQGADCVLTSGEIVQIMEQSDLASNDAAVDTL---F*DM

Parental  KEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAAAYGFRNI
          KE.EVR...GASSD.YLAHIFRH.AKELFN.DVG.LTY..LRNKD.QEVTLERDGEVLLRF.AAY.F.NI
Retrocopy KEKEVRLLDGASSDRYLAHIFRHRAKELFNKDVGVLTYHTLRNKDLQEVTLERDGEVLLRFEAAYSFQNI

Parental  Q-NVVLKLKRGKFPYHFVEVLACAG-GCLSGRGQAQAEDGRADRALLRQMEGIYAAIPVRPPETSAHVQE
          Q..VVLKL.RGKFP.HFVEVLACAG..CLSGRGQAQA.DG.ADRALL..MEGIY.AIPV.PPETSAHVQE
Retrocopy Q<EVVLKLQRGKFPCHFVEVLACAG<ACLSGRGQAQADDGYADRALLQRMEGIYDAIPVWPPETSAHVQE

Parental  LYQEWLGGADSPRPR-ALHTAYQGPGQSA
          LYQEWLG..DSP....ALHTA.QGPGQ.A
Retrocopy LYQEWLGRGDSPQAQAALHTA*QGPGQPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1091 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091 , retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,