RetrogeneDB ID: retro_mluc_1107

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429796:471755..472877(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LTA4H
• Ensembl ID: ENSMLUG00000013624
• Aliases: None
• Description: None

Sequence

>retro_mluc_1107
ATGCCAGAGGTGGTGGGTACGTGCTCCTTGGCCACTCCAGCCTCCGTCTGCCAGACCAAGCATCTCCATCTGCGCTGCAG
CATCGCCTTCACTCTCCGGGGGCTGACTGGGACCTCCGCGCTCACAGTCCAGTCTCAGGAGGACAATCTGCGCAGCCTGA
TTTTGGATACAAAGGATCTTAAAATAGAAAAAGTGGTCATCAATGGACAAGAAGTCAAATATGTTCTTGGAGAAAGACAA
GGTTACAACGGATCACCAATGGAAATCTCTCTTCCCATTGCTCTGAGCAAAAATCAAGAAGTCGTTATAGAAATTTCTTT
TGAAACATCGCCAAAATCTTCTGCCGTTCAGTGGCTCACTCCTGAACAAACTTCCGGGAAGGAGCACCCATATCTCTTTA
GTCAGTGCCAGGCCATCCACTGCCAAGCTGTTCTTCCTTGCCAGGACACACCTTCTTGAAATTAACCTACAGTGCAGAGG
TGTCCGTCCCTAAAGAACTGGTAGCACTTATGAGTGCCATTCGGGATGGAGAAGCACCGGACCCAGAAGATCCGAGCAGG
AAAATACACAGATTCAGCCAAAAAGTCCCCGATTCCCTGCTACTTGATTGCTTTAGTTGTTGGAGCTTTAGAAAGCAGGC
AAATTGGCCCGAGAATATTGGTATGGTCTGAGAAAGAACAGGTGGAAAAGTCAGCTTAAGAATTTTGTGAGACTGAATCT
ATGCTTAAAATTGCAGAAGATCTGGGAGGCCCATACGTATGGGGGCAGTATGACCTATTGGTCCTGCCACCATCCCTCCC
TTATGGCGACATGAAAAATCCTTGCCTCACTTTTGTAACTCCTACTCTGCTGGCAGGTGACAAGTCACTCTCCAATGTTA
TTGCACATGAAATATCTCATAGTTGGACAGGAAATCTAGTGACCAACAAAACTTGGGATCACTTTTGGTTAAATGAAGGA
CATACTCTGTACTTGGAATGCCACATTTGCGGACAGTTGTTTGGTGAAAAGTTCAGACATTTTCATGCTCTGGGAGGATG
GGGAGAACTATAGAATTCAATAAAGACTTTTGGGGATACACATCCTTTCACCAAACTTGTGGTCGATCTGGAGAATGTAG
AC

Alignment

ORF - retro_mluc_1107 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.74 %
• Parental protein coverage: 61.27 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MPAVVDTCSLATPASVCRTKHLHLRCSVDFTRRALTGTAALTVQAQEDNLRSLILDTKDLTIEKVVINGQ
          MP.VV.TCSLATPASVC.TKHLHLRCS..FT.R.LTGT.ALTVQ.QEDNLRSLILDTKDL.IEKVVINGQ
Retrocopy MPEVVGTCSLATPASVCQTKHLHLRCSIAFTLRGLTGTSALTVQSQEDNLRSLILDTKDLKIEKVVINGQ

Parental  EVKYVLGERQSYKGSPLEISLPIALSKNQEVVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIH
          EVKYVLGERQ.Y.GSP.EISLPIALSKNQEVVIEISFETSPKSSA.QWLTPEQTSGKEHPYLFSQCQAIH
Retrocopy EVKYVLGERQGYNGSPMEISLPIALSKNQEVVIEISFETSPKSSAVQWLTPEQTSGKEHPYLFSQCQAIH

Parental  CRAILPCQDTPS-VKLTYSAEVNTTNYSLKCLSLKNWYGEAPDPEDPSRKIYKFSQKVP-IPCYLIALVV
          C.A.LPCQDTPS..KLTYSAEV..........S.....GEAPDPEDPSRKI..FSQKVP.IPCYLIALVV
Retrocopy CQAVLPCQDTPS<LKLTYSAEVSVPKELVALMSAIR-DGEAPDPEDPSRKIHRFSQKVP>IPCYLIALVV

Parental  GALESRQIGPRTLVWSEKEQVEKSAYEFSETETMLQIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLT
          GALESRQIGPR.LVWSEKEQVEKSA.EF.ETE.ML.IAEDLGGPYVWGQYDLLVLPPS.PYG.M.NPCLT
Retrocopy GALESRQIGPRILVWSEKEQVEKSA*EFCETESMLKIAEDLGGPYVWGQYDLLVLPPSLPYGDMKNPCLT

Parental  FVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGERFRHFHALGGW
          FVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHT.YLE.HICG.LFGE.FRHFHALGGW
Retrocopy FVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTLYLECHICGQLFGEKFRHFHALGGW

Parental  GELQNSIKTFGDTHPFTKLVVDLANVD
          GEL.NSIKTFGDTHPFTKLVVDL.NVD
Retrocopy GEL*NSIKTFGDTHPFTKLVVDLENVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1107 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013624	1 retrocopy	retro_mluc_1107 ,
Sorex araneus	ENSSARG00000001882	1 retrocopy	retro_sara_522,