RetrogeneDB ID:

retro_mluc_1351

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429826:83140..83584(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TTC1
Ensembl ID:ENSMLUG00000003057
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1351
TTACGGGCTTGCCCATCCTGCTTCCAGAAAGACAGTTCTATTCTGTTTTCAGATAGAGCTGCTGCAAGGATGAAACAGGA
CAAGAAAGAGATGGCCATCAGTGACTGCAGCAAAGCCATTCAGCTAAACCCCAGTTACATCAGGGCTCTGCTGAGGCGAG
CAGAGCTGTATGAGAGCACCGACAAGCTCGATGAAGCCCTTTTCAAATCCATTCTAGAAAAAGGTCCATCAGTGCACCAA
GCCAGGGAAGCTTGTATGAGATTACCTAAGCAAACTGAAGAACGAAATGAAAGACTGAAGGAAGAGATGTTAGGTAAACT
AAAAGATCTTGGGAACTTGGTTCTCTGACCTTTTGGACTCTCCACAGAAAATTTCCAGATTAAACAGGATTCGTCTACTG
GCTCCTACTCTATCAATTTTGTTCGAAATCCAAATAATAACAGA

ORF - retro_mluc_1351 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.67 %
Parental protein coverage: 51.19 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDCSKAIQLNPSYIRALLRRAELYESTDKLDEALEDY
L..CPSCFQKD.SILFS.RAAARMKQDKKEMAISDCSKAIQLNPSYIRALLRRAELYESTDKLDEAL...
RetrocopyLRACPSCFQKDSSILFSDRAAARMKQDKKEMAISDCSKAIQLNPSYIRALLRRAELYESTDKLDEAL--F
ParentalKSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSI
KSILEK.PSVHQAREACMRLPKQ.EERNERLKEEMLGKLKDLGNLVL.PFGLSTENFQIKQDSSTGSYSI
RetrocopyKSILEKGPSVHQAREACMRLPKQTEERNERLKEEMLGKLKDLGNLVL*PFGLSTENFQIKQDSSTGSYSI
ParentalNFVQNPNNNR
NFV.NPNNNR
RetrocopyNFVRNPNNNR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1351 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG000000193971 retrocopy
Myotis lucifugus ENSMLUG00000003057 2 retrocopies
retro_mluc_1351 , retro_mluc_2408,
Otolemur garnettii ENSOGAG000000163421 retrocopy
Tupaia belangeri ENSTBEG000000046411 retrocopy
Vicugna pacos ENSVPAG000000120311 retrocopy



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