RetrogeneDB ID: retro_mluc_2061

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430009:627504..627908(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AP1S1
• Ensembl ID: ENSMLUG00000009898
• Aliases: None
• Description: None

Sequence

>retro_mluc_2061
TTCACGCTGTTGTTCAGCTGGCAGGGAAGTTGCTGCACAAAAATGGTACCTGGCTACTCCGACACGCGGCAAAGGAAGAT
GGTGCCAGAGCTTGTTCTGTCTTGCAAGCTCAAGATGTACAGCTTGCTGAGTGAAGGGACCTCCAAGATGTTGTAATAGA
TATGCAGCCTCTACTTATGCCCAGCCACCCAGGGCCAGCCAAGGAGCTCATCACGCTGGAGCCGACACAATGATCTCCGG
AGCTCCTCACAAGCACGTGGACAGCATGCGAGCTGGGCATCATCTTCAACTCAAGGAAGGCCTACTTCGTCTTGGATGGG
TTTTGGATGGGGGAGCGATATCCAGGCACCTCTGAGAAGAGTGTGCCCAAGTTTGTGGAGCAGGCCGACCTGCTGCCGCT
GGAA

Alignment

ORF - retro_mluc_2061 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.08 %
• Parental protein coverage: 84.43 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  FMLLFSRQ-GKL-RLQKWYLAT-SDKERKKMVRELMQVVLARKPKMCSFL-EWRDLKVVY-KRYA-SLYF
          F.LLFS.Q.GKL...QKWYLAT.SD....KMV.EL...VL..K.KM.S.L.E.RDL..V...RYA.SLY.
Retrocopy FTLLFSWQ<GKL<AAQKWYLAT<SDTRQRKMVPEL---VLSCKLKMYSLL<E*RDLQDVV<NRYA<SLYL

Parental  CCAIEGQDN-ELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIE
          C.A..GQ...ELITLE......ELL.......CEL.IIFN..KAYF.LD.F.MG.....TS.KSV.K..E
Retrocopy CPATQGQPR<ELITLEPTQ*SPELLTSTW-TACELGIIFNSRKAYFVLDGFWMGERYPGTSEKSVPKFVE

Parental  QADLLQEE
          QADLL..E
Retrocopy QADLLPLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2061 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000002673	1 retrocopy	retro_amel_210,
Felis catus	ENSFCAG00000029169	1 retrocopy	retro_fcat_152,
Homo sapiens	ENSG00000106367	1 retrocopy	retro_hsap_3765,
Macropus eugenii	ENSMEUG00000016245	3 retrocopies	retro_meug_1011, retro_meug_154, retro_meug_2051,
Microcebus murinus	ENSMICG00000005406	2 retrocopies	retro_mmur_1026, retro_mmur_1368,
Myotis lucifugus	ENSMLUG00000009898	2 retrocopies	retro_mluc_1493, retro_mluc_2061 ,
Myotis lucifugus	ENSMLUG00000011671	1 retrocopy	retro_mluc_1841,
Mustela putorius furo	ENSMPUG00000015867	1 retrocopy	retro_mputfur_1184,
Pan troglodytes	ENSPTRG00000019520	3 retrocopies	retro_ptro_1234, retro_ptro_24, retro_ptro_2554,