RetrogeneDB ID: retro_mluc_2160

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430065:1357092..1357461(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000025343
• Aliases: None
• Description: None

Sequence

>retro_mluc_2160
CCAGCGTCAATGGAGAGGAAGGGCATCACAAAGGTTCACCCTGTGGTCCTCATGCCTCCTGACTCCCACCCCCTTGAGCC
AAGAAGACCACAGGCTCTGGTGCCCATTCCAATGACTTCTCAGGGACATTCTTTCTCTTCCCTACAGGGCAGGTGCATGG
ACGTCACTCTAGTGAACCCCCACTGTACACAAATGCCCTATGGCCCAATGGCCTGCCTTGGACCCAACCAGGACTACTTC
TTCCTCAACAGCTGCTGCTCATGGTGTCAACACCGCCCTCAGATACGCTCCCAACTTCCCTCCAGGATGCTGCCGCTGAT
CCCTCCCCCTGCCCGTGCGCTCTGCAGAACTACCTTGTCACTCCCACCC

Alignment

ORF - retro_mluc_2160 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.13 %
• Parental protein coverage: 50.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PVQKPEKGLLPLPNPPAPPEPETRPIQTC-PTVIVPC-CGCQEDSMQRIEGRCMDVTLVNPHCTQMPYGP
          P.....KG......P.....P...P.....P...VP.....Q..S.....GRCMDVTLVNPHCTQMPYGP
Retrocopy PASMERKGITKV-HPVVLMPPDSHPLEPRRPQALVPIPMTSQGHSFSSLQGRCMDVTLVNPHCTQMPYGP

Parental  MACLGPSQDYFSLNSCCSWCQHRPQIRSQLPSRMLPLIPPTARALCRTTLSLPP
          MACLGP.QDYF.LNSCCSWCQHRPQIRSQLPSRMLPLIPP.ARALCRTTLSLPP
Retrocopy MACLGPNQDYFFLNSCCSWCQHRPQIRSQLPSRMLPLIPPPARALCRTTLSLPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2160 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000025343	1 retrocopy	retro_mluc_2160 ,