RetrogeneDB ID: retro_mluc_2226

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430124:490627..491120(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000010977
• Aliases: None
• Description: None

Sequence

>retro_mluc_2226
ATCCTCAAAGATGATAATACTGGAGAAGACGAAGAAATGAAGGAAATGGTTTTCTCAGGAACAGAGAAAACAAAACCACA
GGTAACAAAAAGTACTTGTCCTCCACAAGGACGATTGAAGAACTGTATTACCAATGGAGTTTTACTTTTTATCCTATGGT
TTGCAATCTGGTCAATCTCAAGCCCTGACCATTACCCTGATGAAAATTAATTTGGACTATTCATTGTCTTTTTTTGTTCC
CTAATTGGGGGCAAACTTTTGGAAGTCATTAGAATACCTTCAATGCCTCCACTTCCATCTCTTCTTGGGATGTTATTGTC
TGGTTTTACCATTAGGAATGCTCCATATTCAGTGAGTGCATCCATATTAGTAACAAGTGGTCTTCAACTTTAAGAAATAC
TGCCCTTACCCTTTCCTAATAAAAGCTGGACTTGGACTCGATCCGCAGGCTTTGAAGTGTTTGAAGAGAGTTTGTTTAAG
ATTGTCTCATGGA

Alignment

ORF - retro_mluc_2226 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.65 %
• Parental protein coverage: 76.39 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ILKDDNTGEDEETKEIVVLETEETKPQVTKNAFPPQGRLNKCITNGTLLVVIWFAISSISSPDHYPDKNS
          ILKDDNTGEDEE.KE.V...TE.TKPQVTK...PPQGRL..CITNG.LL...WFAI.SISSPDHYPD.N.
Retrocopy ILKDDNTGEDEEMKEMVFSGTEKTKPQVTKSTCPPQGRLKNCITNGVLLFILWFAIWSISSPDHYPDEN*

Parental  FQLLFVFCCSVIGGKLLEVIRIPSVPPLPPLFGMLLAGFAIRNTPY-ISERIHVSKEWSSTLRNIALTL-
          F.L..VF.CS.IGGKLLEVIRIPS.PPLP.L.GMLL.GF.IRN.PY..SE.IH.S..WSSTLRN.ALTL.
Retrocopy FGLFIVFFCSLIGGKLLEVIRIPSMPPLPSLLGMLLSGFTIRNAPY<FSECIHISNKWSSTLRNTALTL<

Parental  ILIKAGLGLDLQALKRLTTVCVRLSMG
          .LIKAGLGLD.QALK.L..VC.RLS.G
Retrocopy FLIKAGLGLDPQALKCLKRVCLRLSHG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2226 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010977	1 retrocopy	retro_mluc_2226 ,