RetrogeneDB ID: retro_mluc_2269

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430167:83217..84571(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MATR3
• Ensembl ID: ENSMLUG00000005798
• Aliases: None
• Description: None

Sequence

>retro_mluc_2269
CCTAGGGATGACTAGGAAGAAAAAAGGCACTTTAGAAGAGATCGTTTTGATGATCATGGTCCTAGTCTCAACCCAGTGCT
TGATGATGACCAGGGAAGCTGTTCTTAAGTATCTGGTTATTATGACAGAATGGATTATGAAGATGACAGATTGAGAGATG
GAGAAAGGTGTAGGGGTGATTCTTTTTTTGGTGAGACCTTGCATAACTATCATAAATTTGACAGTGGGTATGAGAGGATG
AGACGTGGTTCTGACCCCTTACAAGAAAATTCTCTCTTTGAGAAAATGAGGGGCACTCCTCCAAACAGCAATATTGAAGA
CTTCCATGGACTCTGACCGAAGGGTTATCCCCATCGGTGCTCTCTATGTGATTTGCCAGCTCATTCTAATAAGGTGTAGA
GTCAACATATCAATGGAGCAAGTCACAGTCACCCATGCTAGCTGCTTCTTGAAATGTATCCAGAATAGAACCCTAACAAT
GATACAGGACGCACAATGGGTTATCCCTTCATGTTGCAACTATCTACAAACCCAGTACCAGGAATTTTGGGGCCTCCACC
TCTCTCATTTCATCTTGGGGGACCAGCAATAGGACCAAGAGGAAACCTGGGTGCTGGAAATGGGAACCTGCAAGGACCAA
GACACATGCAAAAGGGCAGAGTAGAAACTAGCCAAGTTGTTCATATCATGGATTTCCAATGAGGGGAAAACGTGCAATAT
CAATTATTACAGCTGGTGGGACCATTTGGAATCATTTCAATTCATCTGATTTTAAATAAAATTGATGAGGCGTTTGTTGA
AATGGCAACCACAGAAGATGCTCAGGCTGCAGAGGATTATTATACAGCCACACCAGCATTAGTACTTGGCAAGCCAGTGA
AAGTGCATTTATCACAAGAGTATGAAAGAATAAAGAAACCTGAGGGGAAGCCAGGCCAGAAGTTTGATCAGAAGGAGGAG
CTTGGATGTGTGATACATCTCAGCAACTTACCTCATGGCTATTCTGACAGTGTTGTCCTTAAGCTTGCTGAGTCTTATGG
GAAAATACAGAATTATATACTGATGAGGATGAAAAGTCAGGCCTTTATTGAGATGGAGACAAGAGAAGATGCAATGGCAA
TGGTCAAACACTACTTGAAAAAGGCCGTTTGGTTTCAGAGGAGAAGTGAAAGTTGGCCTATCTAAAAAATTGGTACTAAG
GATTCTTAACAGAGGCATTGACTTACTGAAAAAAGATAAATCCTGAAAAAAATCTTATTCTCCAGATGACAAAAAATCTC
TGACCGATAAGAAATCCAAAACGGATGGCTCCCAGAAGACTGAAAGTACAACTGAAGGTAAAGAACAAGAACAG

Alignment

ORF - retro_mluc_2269 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.26 %
• Parental protein coverage: 53.5 %
• Number of stop codons detected: 8
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PRDDWEEKRHFRRDSFDDRGPSLNPVLDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDDSFFGETSHNY
          PRDD.EEKRHFRRD.FDD.GPSLNPVLD.D.GS.S..SGYYDRMDYEDDRLRDGERCR.DSFFGET.HNY
Retrocopy PRDD*EEKRHFRRDRFDDHGPSLNPVLDDDQGSCS*VSGYYDRMDYEDDRLRDGERCRGDSFFGETLHNY

Parental  HKFDSEYERMGRGPGPLQERSLFEKKRGAPPSSNIEDFHGLLPKGYPHLCSICDLPVHSNKEWSQHINGA
          HKFDS.YERM.RG..PLQE.SLFEK.RG.PP.SNIEDFHGL.PKGYPH.CS.CDLP.HSNK..SQHINGA
Retrocopy HKFDSGYERMRRGSDPLQENSLFEKMRGTPPNSNIEDFHGL*PKGYPHRCSLCDLPAHSNKV*SQHINGA

Parental  SHSRRCQLLLEIYPEWNPDNDTGHTMGDPFMLQQSTNPAPGILGPPPPSFHLGGPAVGPRGNLDKGAGNG
          SHS..C.LLLE.YPE.NP.NDTG.TMG.PFMLQ.STNP.PGILGPPP.SFHLGGPA.GPRGNL..GAGNG
Retrocopy SHSHPC*LLLEMYPE*NPNNDTGRTMGYPFMLQLSTNPVPGILGPPPLSFHLGGPAIGPRGNL--GAGNG

Parental  NLQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAV
          NLQGPRHMQKGRVETS.VVHIMDFQ.G.N..YQLLQLV.PFG.IS.HLILNKI.EAF.EMATTEDAQAA.
Retrocopy NLQGPRHMQKGRVETSQVVHIMDFQ*GENVQYQLLQLVGPFGIISIHLILNKIDEAFVEMATTEDAQAAE

Parental  DYYTTTPALVFGKPVRVHLSQKYKRIKLPTFEPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYG
          DYYT.TPALV.GKPV.VHLSQ.Y.RIK.P...P.QKFDQK.ELG.VIHLSNLPH.GYSDS.VLKLAE.YG
Retrocopy DYYTATPALVLGKPVKVHLSQEYERIKKPEGKPGQKFDQKEELGCVIHLSNLPH-GYSDSVVLKLAESYG

Parental  KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALW-FQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKD
          KI.NYILMRMKSQAFIEMETREDAMAMV.H.LKKA.W.F.G..VKV.LS...KKLVLRI.NRGIDLLKKD
Retrocopy KIQNYILMRMKSQAFIEMETREDAMAMVKHYLKKAVW>FRGE-VKVGLS---KKLVLRILNRGIDLLKKD

Parental  KSRKRSYSPDGKESPSDKKSKTEGSQKTEGTTEGKEQEE
          KS.K.SYSPD.K.S..DKKSKT.GSQKTE.TTEGKEQE.
Retrocopy KS*KKSYSPDDKKSLTDKKSKTDGSQKTESTTEGKEQEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2269 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005798	1 retrocopy	retro_mluc_2269 ,