RetrogeneDB ID: | retro_mluc_2408 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430330:301469..302068(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TTC1 | ||
Ensembl ID: | ENSMLUG00000003057 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.62 % |
Parental protein coverage: | 68.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGEKSENCRVPEDLFSGLQVSDPQEAECAGPSVSNPKDHQPPSKLLKDVEAHPQEDQGEEEHFHDCSASF |
MGEKSENCRVPEDLFSGLQV.DPQ.AECA.PSVSNPKDHQP.SKLL..VEAHPQEDQ.EEEHFHDCSASF | |
Retrocopy | MGEKSENCRVPEDLFSGLQVTDPQKAECASPSVSNPKDHQPQSKLLQEVEAHPQEDQKEEEHFHDCSASF |
Parental | EKEEPGVDKVESKPDDDVNSSELDEEYLIELE-KNMPDEEKQKRREESTRLKEEGNEQFKKGDYIEAERS |
EKEEPGVDKVE.KPDDDVNSSEL.EE.LIELE.KNMPDEEKQKRR.E.TRLKEEGNEQFKKGDYIEAERS | |
Retrocopy | EKEEPGVDKVEKKPDDDVNSSELNEECLIELE<KNMPDEEKQKRRDEGTRLKEEGNEQFKKGDYIEAERS |
Parental | YSQALQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDCSKAIQLNPSYIRALLRRAELYE |
YSQALQM.P.CFQKDRS.LFSNRAAARMKQDKKEMAISD.SKA.QL.PSY.RALLR.....E | |
Retrocopy | YSQALQMGPFCFQKDRSNLFSNRAAARMKQDKKEMAISDFSKASQLKPSY-RALLRSGAVRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000019397 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003057 | 2 retrocopies |
retro_mluc_1351, retro_mluc_2408 ,
|
Otolemur garnettii | ENSOGAG00000016342 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004641 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000012031 | 1 retrocopy |